Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   G0029_RS13380 Genome accession   NZ_CP048670
Coordinates   2767238..2768095 (-) Length   285 a.a.
NCBI ID   WP_194087884.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12138 strain YH12138_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2762238..2773095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0029_RS13360 (G0029_13340) miaB 2763804..2765261 (+) 1458 WP_180106954.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  G0029_RS13365 (G0029_13345) - 2765300..2766391 (+) 1092 WP_180106952.1 PhoH family protein -
  G0029_RS13370 (G0029_13350) ybeY 2766401..2766883 (+) 483 WP_078192431.1 rRNA maturation RNase YbeY -
  G0029_RS13375 (G0029_13355) - 2766947..2767237 (+) 291 WP_180106950.1 antibiotic biosynthesis monooxygenase family protein -
  G0029_RS13380 (G0029_13360) tonB2 2767238..2768095 (-) 858 WP_194087884.1 energy transducer TonB Machinery gene
  G0029_RS13385 (G0029_13365) - 2768354..2769037 (+) 684 WP_078192433.1 hypothetical protein -
  G0029_RS13390 (G0029_13370) - 2769195..2769908 (+) 714 WP_078192434.1 DUF3108 domain-containing protein -
  G0029_RS13395 (G0029_13375) - 2769999..2770574 (+) 576 WP_078189246.1 xanthine phosphoribosyltransferase -
  G0029_RS13400 (G0029_13380) - 2770844..2771242 (+) 399 WP_143221668.1 hypothetical protein -
  G0029_RS13405 (G0029_13385) - 2771352..2771540 (-) 189 WP_180106946.1 hypothetical protein -
  G0029_RS13410 (G0029_13390) wrbA 2771859..2772452 (-) 594 WP_180106944.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32647.21 Da        Isoelectric Point: 7.3203

>NTDB_id=422202 G0029_RS13380 WP_194087884.1 2767238..2768095(-) (tonB2) [Acinetobacter sp. YH12138 strain YH12138_T]
MPLMKEWWKDPIFATALVFAAVLHLAFLTMQFSMPQEADYNTKEIAVSLRSTTEKIEHADFLAQADQQGSGTFRESHRMS
SDMPAPMIEQKAGEQKSEALEQLQQKKELSFEDKVLMTTLSWQKQAEENSRKKAVEELNSQFQAKAAMVASIEAQYLQRQ
QNFSRQQKIKTIDGIQAKQDVSAAYMEKFREKVEFYGNRYYPEAAKQQQLRGEVRLMVILNSNGGIRAIRLIESSGSNLL
DEAAKTSVRKAAPFGLFDAKMKDISELRIVRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=422202 G0029_RS13380 WP_194087884.1 2767238..2768095(-) (tonB2) [Acinetobacter sp. YH12138 strain YH12138_T]
ATGCCCTTGATGAAAGAGTGGTGGAAAGATCCCATATTTGCAACTGCATTAGTGTTTGCTGCTGTGTTGCATTTGGCTTT
TTTAACCATGCAATTTTCCATGCCCCAAGAGGCGGATTATAACACCAAAGAAATTGCAGTTTCTTTACGTTCTACGACGG
AAAAAATTGAACATGCAGACTTTTTAGCACAAGCCGATCAGCAGGGCTCGGGGACATTCCGTGAGTCGCATCGTATGTCG
AGTGACATGCCTGCACCGATGATTGAACAAAAAGCCGGTGAGCAAAAAAGTGAAGCTTTAGAACAACTGCAACAAAAGAA
AGAGCTGAGCTTTGAAGACAAAGTGTTGATGACAACCTTGAGTTGGCAAAAACAAGCTGAAGAAAACAGTCGTAAAAAAG
CCGTTGAGGAGTTGAATAGTCAGTTTCAGGCCAAGGCTGCGATGGTGGCGAGTATCGAAGCTCAATATTTACAACGTCAG
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACCATTGATGGTATTCAAGCCAAGCAAGATGTTTCTGCTGCTTACATGGA
AAAATTTCGCGAAAAAGTCGAATTTTACGGTAACCGTTATTATCCTGAAGCAGCAAAACAGCAGCAGCTCCGCGGTGAAG
TACGCTTAATGGTTATTTTGAACAGTAATGGCGGGATTCGTGCCATTCGTTTGATCGAAAGTTCAGGTTCAAACTTATTG
GACGAAGCTGCAAAAACCTCTGTACGTAAGGCGGCACCTTTTGGTTTGTTTGATGCCAAAATGAAAGACATCTCAGAACT
TCGTATTGTGCGTACTTGGCGCTTTGATCCTGCAGAAGCAGAGTTTGAGGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.043

97.895

0.705

Multiple sequence alignment