Detailed information NTG0422192

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LYSZa7_RS27130
• Genome accession: NZ_CP061699
• Coordinates: 5858505..5859509 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain LYSZa7
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5853505..5864509

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LYSZa7_RS27100 (LYSZa7_27015)	fghA	5853597..5854448 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
LYSZa7_RS27105 (LYSZa7_27020)	ispF	5854519..5854992 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LYSZa7_RS27110 (LYSZa7_27025)	truD	5854989..5856056 (+)	1068	WP_073699697.1	tRNA pseudouridine(13) synthase TruD	-
LYSZa7_RS27115 (LYSZa7_27030)	surE	5856044..5856793 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
LYSZa7_RS27120 (LYSZa7_27035)	-	5856826..5857461 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
LYSZa7_RS27125 (LYSZa7_27040)	-	5857507..5858400 (+)	894	WP_003138035.1	peptidoglycan DD-metalloendopeptidase family protein	-
LYSZa7_RS27130 (LYSZa7_27045)	rpoS	5858505..5859509 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
LYSZa7_RS27135 (LYSZa7_27050)	fdxA	5859936..5860259 (-)	324	WP_003092272.1	ferredoxin FdxA	-
LYSZa7_RS27140 (LYSZa7_27055)	mutS	5860326..5862893 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
LYSZa7_RS27145 (LYSZa7_27060)	-	5863019..5864026 (-)	1008	WP_003092265.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=422192 LYSZa7_RS27130 WP_003113871.1 5858505..5859509(+) (rpoS) [Pseudomonas aeruginosa strain LYSZa7]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=422192 LYSZa7_RS27130 WP_003113871.1 5858505..5859509(+) (rpoS) [Pseudomonas aeruginosa strain LYSZa7]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGATCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653