Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   G0029_RS01560 Genome accession   NZ_CP048670
Coordinates   331595..333817 (-) Length   740 a.a.
NCBI ID   WP_180106195.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12138 strain YH12138_T     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 326595..338817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0029_RS01535 (G0029_01530) - 326647..327111 (-) 465 WP_078192815.1 DUF2147 domain-containing protein -
  G0029_RS01540 (G0029_01535) - 327300..327764 (-) 465 WP_180106191.1 DUF2147 domain-containing protein -
  G0029_RS01545 (G0029_01540) - 328049..328501 (-) 453 WP_180035003.1 DUF2147 domain-containing protein -
  G0029_RS01550 (G0029_01545) hslO 328748..329623 (-) 876 WP_111885623.1 Hsp33 family molecular chaperone HslO -
  G0029_RS01555 (G0029_01550) - 329674..331515 (-) 1842 WP_180106193.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  G0029_RS01560 (G0029_01555) priA 331595..333817 (-) 2223 WP_180106195.1 primosomal protein N' Machinery gene
  G0029_RS01565 (G0029_01560) gspF 333968..335173 (+) 1206 WP_078189785.1 type II secretion system inner membrane protein GspF -
  G0029_RS01570 (G0029_01565) gspG 335210..335647 (+) 438 WP_180106197.1 type II secretion system major pseudopilin GspG -
  G0029_RS01575 (G0029_01570) - 335931..336266 (+) 336 WP_180106199.1 hypothetical protein -
  G0029_RS01580 (G0029_01575) - 336499..336837 (+) 339 Protein_301 tRNA-binding protein -
  G0029_RS01585 (G0029_01580) lnt 336923..338482 (-) 1560 WP_180106201.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83863.96 Da        Isoelectric Point: 8.6742

>NTDB_id=422184 G0029_RS01560 WP_180106195.1 331595..333817(-) (priA) [Acinetobacter sp. YH12138 strain YH12138_T]
MANSASIATPIYRVRVAVPVYLYDCFDYSLSQEQYQQAEVGARVAVSFGRQNLTGIIVEKIAPDAPLDSSFKLKAITELL
DDRAILDEKVLNLLTWSAQYYQFPIGEVMQSALPTLLRQGKPYNLLARTWNLIDHNAEAKIKRSERQQEAYKILKLHPTG
TGENLLNLSGVETATLKALEKKGICECVLAEQDFSPMPMSMAQMPLTANPDQKKAIDTVLKARKKYQAFLLDGLTGSGKT
EVYLQIMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCNIALLHSGLNDSKRMQAWQAAQTGKASIILGTRSAIYTPL
PNLGLIVIDEEHDLSFKQQEGFRYHARDVALYRGHLEECPVILGSATPSIECYALAKQGKMTILELNQRAGTAVMPKMHI
LDLKVAQKQHGISQLLIGEIRKRLEKKEQVLVFLNRRGYAPVLICESCAWQAKCPHCDANFTVHRTPYQHLHCHHCGTIH
RMPDHCPQCNHQELKSIGMGTAKVEESLNELFPEHDIIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRAIERTAQLIVQVTGRAGRGERKGDVFLQTLRPDHPLLNILVNENYRKFAKETMKEREMAQM
PPFRYAALVRCESKNQELNTEFLQQHAQLLRQDSAGIIDIWGPIPAPMERKAGRYQSHMVLLSTDRARLHYYLRYWWQNI
LHNKPSNMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=422184 G0029_RS01560 WP_180106195.1 331595..333817(-) (priA) [Acinetobacter sp. YH12138 strain YH12138_T]
ATGGCAAATTCAGCGAGCATTGCAACACCTATTTACCGCGTTCGAGTCGCCGTTCCGGTATATTTATACGACTGCTTCGA
TTACAGCTTAAGCCAAGAGCAATACCAACAAGCTGAAGTAGGTGCACGCGTTGCTGTATCTTTTGGTCGGCAAAATTTGA
CCGGCATCATCGTGGAAAAAATTGCACCCGATGCACCACTCGATTCAAGCTTTAAACTCAAGGCCATTACTGAACTACTT
GATGATCGCGCCATTTTAGATGAGAAAGTTTTAAATTTATTGACATGGTCTGCACAGTATTACCAATTTCCGATTGGTGA
AGTCATGCAAAGTGCCCTTCCGACGCTGTTACGCCAAGGAAAGCCCTATAATTTATTGGCACGGACATGGAATCTGATTG
ACCATAATGCTGAAGCCAAAATTAAACGTTCAGAGCGTCAACAAGAAGCGTATAAAATACTAAAATTACATCCTACAGGC
ACAGGTGAAAATCTTTTAAATTTGTCAGGTGTGGAAACAGCAACACTCAAAGCCTTAGAGAAAAAAGGCATCTGCGAATG
TGTGTTAGCAGAACAAGACTTTAGCCCGATGCCGATGAGCATGGCGCAAATGCCTCTTACGGCAAACCCTGACCAAAAAA
AAGCGATCGATACCGTATTAAAAGCACGTAAAAAATATCAGGCCTTCCTGCTCGATGGCTTAACTGGCAGTGGTAAAACT
GAAGTCTATTTACAGATCATGCAAGAGGTTCTCAAGCAAGGCAAACAGGTCTTGGTTTTAGTTCCTGAGATTGGACTCAC
CCCACAGACCATTAGCCGCTTCCAATCACGTTTTCATTGCAATATTGCCCTATTACATTCGGGGTTAAACGATTCAAAAC
GTATGCAAGCTTGGCAAGCTGCGCAAACAGGTAAGGCGTCAATTATTTTAGGCACACGTTCTGCGATTTATACGCCACTG
CCTAATCTAGGTTTAATTGTGATTGATGAAGAGCATGATCTGTCCTTTAAACAACAAGAAGGCTTTCGCTATCACGCTCG
GGATGTCGCACTTTATCGTGGGCATCTGGAAGAATGCCCCGTAATTTTAGGTTCTGCCACGCCTAGCATTGAATGCTATG
CCCTTGCCAAACAAGGCAAGATGACAATTTTGGAACTAAACCAACGCGCAGGCACCGCGGTCATGCCGAAAATGCACATC
CTTGATCTGAAAGTGGCACAGAAACAGCATGGAATTAGCCAATTATTAATTGGTGAAATCCGTAAGCGCCTTGAAAAAAA
AGAGCAAGTATTGGTGTTTTTAAACCGCCGCGGTTATGCACCTGTACTGATTTGTGAAAGTTGTGCATGGCAGGCCAAAT
GTCCACACTGTGATGCCAATTTCACGGTTCATCGTACACCTTATCAACATTTACATTGTCATCACTGCGGCACCATTCAC
CGTATGCCAGATCACTGTCCACAGTGTAATCATCAGGAGCTCAAATCTATTGGGATGGGCACAGCCAAAGTTGAAGAAAG
TTTAAATGAGTTGTTTCCTGAACATGACATCATTCGAGTGGATCGTGACTCAACCAGCCGCGTTGGTAGTTGGCAAAAGA
TTTATGACAAAATTCAAAAAAGTGAGCCTGCTATTTTGCTTGGTACGCAAATGCTGGCCAAAGGTCATCATTTTCCTTAC
GTCACCTTGGTGGCGATTTTAGATATCGATTCAGGTCTGCTGAGTGTGGACTTCCGTGCCATCGAACGTACCGCTCAACT
CATTGTGCAAGTCACAGGGCGTGCCGGCCGTGGCGAACGTAAAGGCGATGTATTCCTACAAACATTAAGACCCGACCATC
CGCTTTTGAATATTTTGGTCAATGAGAACTACCGAAAATTTGCCAAAGAAACCATGAAAGAACGGGAAATGGCACAAATG
CCACCGTTTCGCTATGCCGCATTGGTACGCTGTGAGTCAAAAAACCAAGAACTCAATACTGAATTTTTACAGCAACATGC
CCAATTGCTGCGTCAGGACTCTGCTGGAATTATTGACATTTGGGGGCCGATTCCTGCCCCGATGGAGCGCAAAGCCGGAC
GTTATCAATCCCACATGGTTTTACTGTCTACAGATCGTGCGCGCTTACATTATTATCTGCGTTATTGGTGGCAAAACATC
TTGCATAACAAGCCATCAAATATGAAATTGAGCCTCGATATAGACCCACAGGAACTCAGTTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(209-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.448

98.919

0.707

Multiple sequence alignment