Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   G0029_RS01225 Genome accession   NZ_CP048670
Coordinates   255856..256182 (+) Length   108 a.a.
NCBI ID   WP_078190459.1    Uniprot ID   -
Organism   Acinetobacter sp. YH12138 strain YH12138_T     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 250856..261182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0029_RS01200 (G0029_01195) hemC 251533..252450 (+) 918 WP_078193127.1 hydroxymethylbilane synthase -
  G0029_RS01205 (G0029_01200) - 252454..253233 (+) 780 WP_180109658.1 uroporphyrinogen-III synthase -
  G0029_RS01210 (G0029_01205) - 253230..254072 (+) 843 WP_180109659.1 hypothetical protein -
  G0029_RS01215 (G0029_01210) - 254079..255272 (+) 1194 WP_180109660.1 heme biosynthesis protein HemY -
  G0029_RS01220 (G0029_01215) - 255282..255713 (+) 432 WP_180036137.1 acyl-CoA thioesterase -
  G0029_RS01225 (G0029_01220) hns 255856..256182 (+) 327 WP_078190459.1 H-NS family nucleoid-associated regulatory protein Regulator
  G0029_RS01230 (G0029_01225) gspN 256350..257093 (+) 744 WP_180109661.1 type II secretion system protein N -
  G0029_RS01235 (G0029_01230) - 257093..257959 (+) 867 WP_180109662.1 type II secretion system protein N -
  G0029_RS01240 (G0029_01235) gspD 258002..260233 (+) 2232 WP_180109663.1 type II secretion system secretin GspD -
  G0029_RS01245 (G0029_01240) - 260311..261060 (+) 750 WP_180106154.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12321.05 Da        Isoelectric Point: 5.3232

>NTDB_id=422183 G0029_RS01225 WP_078190459.1 255856..256182(+) (hns) [Acinetobacter sp. YH12138 strain YH12138_T]
MMPDISNLSVEELKKLQVEAEALIASKKDQAIEDAYNRIVEIAENLDLSVEQILEFGSSKRKKSTRKAVEPRYRSKTNAD
DTWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=422183 G0029_RS01225 WP_078190459.1 255856..256182(+) (hns) [Acinetobacter sp. YH12138 strain YH12138_T]
ATTATGCCTGATATTAGTAATTTATCAGTTGAAGAGTTAAAGAAGCTTCAAGTAGAAGCTGAAGCGCTGATTGCATCTAA
AAAAGATCAAGCGATTGAAGATGCGTACAACCGTATTGTTGAAATTGCAGAAAATTTAGATTTAAGCGTTGAACAAATCC
TTGAATTTGGTTCAAGCAAACGTAAAAAATCAACTCGTAAAGCGGTTGAACCACGTTACCGTAGCAAAACCAATGCAGAT
GACACTTGGACTGGTCGTGGTAAACAACCGCGTTGGTTAGTGGCTGAGCTAGAAAAAGGCGCGAAACTAGAAGACTTCTT
AATTTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

82.407

100

0.824

Multiple sequence alignment