Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   G0028_RS02240 Genome accession   NZ_CP048659
Coordinates   482848..485088 (-) Length   746 a.a.
NCBI ID   WP_180046825.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain YH12207_T     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 477848..490088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0028_RS02220 (G0028_02220) - 477873..478838 (-) 966 WP_130074277.1 DnaJ C-terminal domain-containing protein -
  G0028_RS02225 (G0028_02225) - 479130..479582 (-) 453 WP_180046831.1 DUF2147 domain-containing protein -
  G0028_RS02230 (G0028_02230) - 479713..480588 (-) 876 WP_180046828.1 Hsp33 family molecular chaperone HslO -
  G0028_RS02235 (G0028_02235) - 480662..482545 (-) 1884 WP_174493411.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  G0028_RS02240 (G0028_02240) priA 482848..485088 (-) 2241 WP_180046825.1 primosomal protein N' Machinery gene
  G0028_RS02245 (G0028_02245) gspF 485253..486458 (+) 1206 WP_130074282.1 type II secretion system inner membrane protein GspF -
  G0028_RS02250 (G0028_02250) gspG 486506..486943 (+) 438 WP_130074283.1 type II secretion system major pseudopilin GspG -
  G0028_RS02255 (G0028_02255) - 487217..487552 (+) 336 WP_180046823.1 hypothetical protein -
  G0028_RS02260 (G0028_02260) lnt 487632..489191 (-) 1560 WP_130074285.1 apolipoprotein N-acyltransferase -
  G0028_RS02265 (G0028_02265) - 489188..490027 (-) 840 WP_217431197.1 HlyC/CorC family transporter -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 84937.32 Da        Isoelectric Point: 8.8746

>NTDB_id=422155 G0028_RS02240 WP_180046825.1 482848..485088(-) (priA) [Acinetobacter piscicola strain YH12207_T]
MPNSVNATSPVSEPTIYRVRVAVPVFLYDHFDYKVTAEQYAQADVGMRVAVSFGRQKLVAIITEKLAIDEPLDPRFQLKF
VTEFLDDRPILNDKVLSLLTWAAQYYQFPMGEVMHTALPTLLRQGKPYNLLARVWKVLDLHAEDKVKRSEKQQDAYKILK
LHPQGTQENILNLSGIETATLKALEKKEIIVCDLEPQNFKPEPVRLAQMPLTANDEQKKAIQTILKAQKKYQAFLLDGLT
GSGKTEVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCNIALLHSGLNDSKRLQAWQHTETGKASIILGTRSA
IFTPMPNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYCLVQQGKLTRLELNQRAGTAVM
PKMHVIDLKISKKTAGLSEQLISEIGKRLEKKEQVLIFLNRRGYAPVLICESCGWQANCPHCDAHFTLHLKPYSHLHCHH
CGTINRLPDACPECQQETLKPIGMGTAKVEEALNELFPKYPVLRVDRDSTSRVGSWQKIYDQIQKSEPTILLGTQMLAKG
HHFPYVTLVAILDIDTGLLSVDFRATERTAQLIVQVAGRSGRGEKKGDVYLQTLRPEHPLLNILLNENYRAFAKQTLADR
KIAQMPPYRYAILIRCESRVQQDNQSFLTEMTQQLRQQSAENLIDIWGPIPAPMERKAGRYQAHVVLLSHDRAKMHFYVR
QWWQYVLQQKPSQMKLTIDVDPQELS

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=422155 G0028_RS02240 WP_180046825.1 482848..485088(-) (priA) [Acinetobacter piscicola strain YH12207_T]
ATGCCAAACTCTGTAAATGCCACCTCGCCTGTATCCGAACCCACCATCTACCGTGTACGCGTTGCTGTACCCGTATTTTT
ATATGACCACTTTGACTATAAAGTAACGGCAGAGCAATATGCTCAAGCAGATGTAGGTATGCGTGTCGCTGTGTCTTTTG
GACGGCAAAAGCTTGTTGCCATTATTACTGAAAAATTAGCAATAGATGAACCACTTGACCCTCGTTTTCAACTTAAATTT
GTCACTGAATTTTTAGATGATCGTCCAATTCTAAATGACAAAGTTTTAAGTTTGTTGACATGGGCAGCACAATATTACCA
ATTTCCAATGGGTGAAGTCATGCACACGGCTTTGCCGACATTATTGCGCCAAGGTAAACCGTACAACTTACTCGCACGTG
TTTGGAAAGTATTAGATTTACATGCCGAAGATAAAGTTAAACGCTCTGAAAAACAGCAAGATGCTTATAAAATTTTAAAA
TTACACCCTCAAGGCACACAAGAAAATATTTTAAATCTGAGCGGTATAGAAACGGCAACCTTAAAAGCGTTGGAAAAGAA
AGAAATCATTGTCTGTGATTTAGAGCCACAAAACTTTAAACCTGAGCCTGTTCGTTTGGCACAAATGCCACTCACAGCAA
ATGATGAGCAGAAAAAAGCCATTCAAACCATTTTAAAAGCTCAAAAAAAATATCAAGCATTTTTACTCGATGGTTTGACA
GGCAGTGGGAAAACTGAAGTCTATCTGCAAGTTATGCAAGAGGTCTTAAAGCAAGGCAAACAAGTACTCGTACTAGTGCC
CGAAATCGGTTTAACACCGCAAACCGTCAGCCGTTTCCAATCTCGTTTTCACTGCAATATTGCGCTGTTACACTCAGGTT
TAAATGATAGTAAACGCTTACAAGCATGGCAGCACACTGAAACAGGAAAAGCCTCGATTATTCTAGGAACACGTTCTGCA
ATTTTCACCCCCATGCCTAATCTGGGTTTGATTATTCTGGATGAAGAGCATGATCTTTCCTTCAAGCAACAAGAAGGTTT
TCGTTATCACGCCCGAGATGTTGCCTTGTATCGTGCACATTTGGAAAATTGTCCGATTATTTTAGGCTCTGCGACACCAA
GCATTGACAGTTATTGTTTAGTCCAACAAGGCAAACTCACTCGCTTAGAGTTAAATCAACGTGCAGGTACAGCAGTCATG
CCTAAAATGCACGTCATTGATTTAAAAATCAGTAAAAAAACCGCAGGTTTAAGCGAGCAATTGATCAGTGAAATTGGTAA
ACGTCTAGAGAAAAAAGAACAAGTTTTAATTTTTTTAAATCGACGTGGCTATGCTCCTGTCCTGATTTGTGAAAGTTGTG
GATGGCAAGCCAATTGTCCACATTGTGATGCACATTTCACCCTGCATTTAAAACCTTATTCGCATTTACATTGTCACCAT
TGTGGGACGATTAATCGCTTACCTGATGCTTGTCCTGAATGTCAGCAAGAGACCTTAAAACCGATTGGCATGGGTACAGC
CAAAGTGGAAGAAGCACTTAATGAGCTATTCCCTAAATATCCTGTACTCCGTGTCGATCGTGACTCGACGAGTCGGGTTG
GCAGTTGGCAAAAAATCTATGATCAGATCCAAAAAAGTGAACCCACCATTTTATTAGGTACACAAATGTTGGCAAAAGGA
CATCATTTTCCTTATGTCACTTTAGTGGCGATTTTGGACATCGATACAGGTTTATTGAGTGTTGACTTTCGTGCTACAGA
ACGCACAGCGCAGTTAATTGTACAAGTGGCAGGACGTTCGGGACGTGGTGAGAAAAAGGGTGATGTTTATTTACAAACAT
TAAGACCTGAGCATCCACTATTAAATATATTATTGAATGAAAATTATCGGGCTTTTGCCAAACAAACATTAGCAGACCGA
AAAATTGCTCAAATGCCGCCCTATCGTTACGCGATTTTGATCCGTTGTGAGTCAAGAGTTCAACAGGATAATCAAAGCTT
TTTAACGGAAATGACCCAACAATTAAGACAACAGTCAGCGGAAAATTTAATCGATATTTGGGGACCTATTCCTGCCCCTA
TGGAGCGTAAAGCAGGTCGTTATCAAGCTCATGTTGTTTTACTCTCGCATGACCGTGCCAAAATGCACTTTTATGTTCGT
CAATGGTGGCAATATGTACTTCAACAAAAACCTTCTCAAATGAAACTGACCATTGATGTCGACCCACAAGAGTTAAGCTA
A

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(647-742)

DEAD/DEAH box helicase (DEAD)

(215-374)

3DNA-binding domain (3BD) (PriA_3primeBD)

(20-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.892

99.196

0.713

Multiple sequence alignment