Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   G0028_RS02000 Genome accession   NZ_CP048659
Coordinates   423433..423759 (+) Length   108 a.a.
NCBI ID   WP_130074517.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain YH12207_T     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 418433..428759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0028_RS01975 (G0028_01975) hemC 418988..419911 (+) 924 WP_171457493.1 hydroxymethylbilane synthase -
  G0028_RS01980 (G0028_01980) - 419911..420693 (+) 783 WP_180044930.1 uroporphyrinogen-III synthase -
  G0028_RS01985 (G0028_01985) - 420690..421535 (+) 846 WP_174493435.1 hypothetical protein -
  G0028_RS01990 (G0028_01990) - 421537..422733 (+) 1197 WP_180044929.1 heme biosynthesis protein HemY -
  G0028_RS01995 (G0028_01995) - 422745..423176 (+) 432 WP_130074516.1 acyl-CoA thioesterase -
  G0028_RS02000 (G0028_02000) hns 423433..423759 (+) 327 WP_130074517.1 H-NS family nucleoid-associated regulatory protein Regulator
  G0028_RS02005 (G0028_02005) gspN 423931..424674 (+) 744 WP_180044928.1 type II secretion system protein N -
  G0028_RS02010 (G0028_02010) - 424677..425534 (+) 858 WP_180044927.1 type II secretion system protein N -
  G0028_RS02015 (G0028_02015) gspD 425576..427816 (+) 2241 WP_180044926.1 type II secretion system secretin GspD -
  G0028_RS02020 (G0028_02020) - 427942..428658 (+) 717 WP_130074521.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12389.13 Da        Isoelectric Point: 5.9595

>NTDB_id=422154 G0028_RS02000 WP_130074517.1 423433..423759(+) (hns) [Acinetobacter piscicola strain YH12207_T]
MMPDISDLSVEELERLAAQAEALIESKKDQKIEDAYNKIIEIAEAAGLTLEQFIEYGTHKRKKTTRKAVEPRYRNKNNAA
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=422154 G0028_RS02000 WP_130074517.1 423433..423759(+) (hns) [Acinetobacter piscicola strain YH12207_T]
ATGATGCCTGATATTAGTGATCTTTCGGTAGAAGAGTTAGAGCGTTTAGCAGCACAAGCTGAAGCCTTGATTGAATCAAA
AAAAGATCAAAAAATAGAAGATGCTTATAATAAAATTATTGAAATTGCAGAAGCTGCGGGTCTAACTTTAGAACAGTTCA
TCGAATATGGTACGCATAAACGTAAAAAGACAACGCGTAAAGCCGTTGAACCACGTTATCGTAACAAAAACAATGCAGCA
GAAACATGGACTGGACGTGGTAAACAACCTCGTTGGTTAGTGGCGGAAATTGAAAAAGGCGCTAAATTAGAAGATTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

80.556

100

0.806

Multiple sequence alignment