Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   G0028_RS01270 Genome accession   NZ_CP048659
Coordinates   253701..254855 (-) Length   384 a.a.
NCBI ID   WP_180046513.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain YH12207_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 248701..259855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0028_RS01250 (G0028_01250) - 249760..250404 (+) 645 WP_130074799.1 TetR/AcrR family transcriptional regulator -
  G0028_RS01255 (G0028_01255) - 250548..251423 (+) 876 WP_174493646.1 DMT family transporter -
  G0028_RS01260 (G0028_01260) - 251902..252471 (-) 570 WP_130074798.1 L-threonylcarbamoyladenylate synthase -
  G0028_RS01265 (G0028_01265) dprA 252515..253648 (-) 1134 WP_180046515.1 DNA-processing protein DprA Machinery gene
  G0028_RS01270 (G0028_01270) tsaP 253701..254855 (-) 1155 WP_180046513.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  G0028_RS01275 (G0028_01275) def 254978..255508 (+) 531 WP_130074795.1 peptide deformylase -
  G0028_RS01280 (G0028_01280) - 255601..256041 (+) 441 WP_130074794.1 DUF2946 family protein -
  G0028_RS01285 (G0028_01285) - 256114..258180 (+) 2067 WP_180046510.1 TonB-dependent copper receptor -
  G0028_RS01290 (G0028_01290) - 258275..259462 (+) 1188 WP_180046508.1 hypothetical protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41518.40 Da        Isoelectric Point: 8.8371

>NTDB_id=422146 G0028_RS01270 WP_180046513.1 253701..254855(-) (tsaP) [Acinetobacter piscicola strain YH12207_T]
MIKFFNGTKINATGFKKQVLAMALCISAGVAVVDVAHAAPSPNQNPPSLKANAPHVYVVKRGDTLWDIAGRFLSKPWRWK
EIWASNRHVKNPHWIYPGDKLLLCSVNGRPLVGVDEGDGCDGIIRRHQGGASLRPQVRVESIGNTIPIISSADIKPWLEH
SIIVSPESLIGVPYILGAADNRVITGAGQTVYARGNGLVVGQRYGVYRQAEPYFFVDEKGKKINAGQELTEVASAVAVAG
ENDVTTLELTDSYNAEVRNGDYVLPVYEYNLPSIFYPTAQNEVLTGGKIVRVQGSIGTGAVNGVVTIDRGSVDGAKAGQV
FSIYQQGEVVKDPKTKEPIKLPNQNVGTLMVFKTFERFSYGYILDSALPIKVGSSIQTPAIAEN

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=422146 G0028_RS01270 WP_180046513.1 253701..254855(-) (tsaP) [Acinetobacter piscicola strain YH12207_T]
ATGATAAAGTTTTTCAATGGCACAAAGATTAATGCCACGGGGTTTAAGAAGCAGGTTTTGGCTATGGCACTCTGCATCAG
TGCAGGTGTAGCTGTAGTGGACGTTGCACATGCAGCGCCGAGTCCAAACCAAAACCCACCCTCTCTAAAAGCCAATGCAC
CGCATGTTTATGTGGTCAAACGTGGCGATACGTTATGGGATATTGCAGGACGATTCCTCAGCAAACCATGGCGTTGGAAA
GAGATTTGGGCCAGTAACCGCCATGTCAAAAACCCACATTGGATCTATCCCGGGGATAAATTATTACTCTGTAGCGTAAA
TGGTCGTCCACTGGTCGGTGTCGATGAGGGTGACGGCTGTGATGGTATTATTCGCCGTCATCAAGGTGGTGCATCTTTAC
GCCCACAAGTACGTGTTGAATCTATTGGAAATACTATTCCAATCATTTCAAGTGCAGATATCAAACCATGGTTAGAACAT
AGTATTATCGTTTCACCTGAATCACTCATTGGCGTGCCTTATATTCTGGGTGCAGCGGATAATCGTGTGATTACAGGTGC
AGGTCAAACCGTCTATGCTCGTGGCAATGGTTTAGTTGTTGGACAACGCTATGGTGTGTATCGTCAAGCTGAGCCATATT
TCTTTGTCGATGAAAAAGGCAAAAAAATCAATGCAGGTCAAGAACTTACTGAAGTCGCTTCTGCTGTTGCAGTTGCAGGT
GAGAATGATGTTACAACGCTTGAACTGACTGACAGTTATAATGCTGAAGTCCGTAATGGTGATTATGTCTTACCTGTGTA
TGAGTATAATTTACCTTCTATTTTTTATCCTACAGCACAAAATGAAGTACTCACTGGTGGTAAAATCGTTCGTGTACAAG
GCTCAATTGGCACAGGTGCAGTCAATGGTGTTGTAACTATTGATCGTGGTAGCGTAGATGGTGCAAAAGCTGGACAAGTA
TTTAGCATTTACCAACAGGGTGAAGTGGTAAAAGATCCAAAAACCAAAGAACCAATCAAACTACCGAACCAAAATGTCGG
CACTTTGATGGTCTTCAAAACGTTTGAGCGTTTTAGCTATGGCTATATTTTAGATAGTGCATTGCCAATTAAAGTGGGTT
CTTCAATTCAAACCCCTGCGATTGCAGAAAATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(57-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

62.467

99.219

0.62

Multiple sequence alignment