Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LYSZa7_RS07870 Genome accession   NZ_CP061699
Coordinates   1703524..1704966 (+) Length   480 a.a.
NCBI ID   WP_200200342.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LYSZa7     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1698524..1709966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYSZa7_RS07850 (LYSZa7_07850) - 1699192..1700763 (-) 1572 WP_128527386.1 DUF4129 domain-containing protein -
  LYSZa7_RS07855 (LYSZa7_07855) - 1700750..1701730 (-) 981 WP_003134640.1 stage II sporulation protein M -
  LYSZa7_RS07860 (LYSZa7_07860) - 1701727..1702524 (-) 798 WP_023443546.1 RDD family protein -
  LYSZa7_RS07865 (LYSZa7_07865) - 1702562..1703299 (-) 738 WP_003101171.1 hypothetical protein -
  LYSZa7_RS07870 (LYSZa7_07870) sbcB 1703524..1704966 (+) 1443 WP_200200342.1 exodeoxyribonuclease I Machinery gene
  LYSZa7_RS07875 (LYSZa7_07875) mvaT 1705051..1705425 (-) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  LYSZa7_RS07880 (LYSZa7_07880) purU 1705685..1706536 (+) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  LYSZa7_RS07885 (LYSZa7_07885) - 1706586..1706798 (+) 213 WP_200200343.1 hypothetical protein -
  LYSZa7_RS07890 (LYSZa7_07890) - 1706773..1707774 (-) 1002 WP_003093885.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  LYSZa7_RS07895 (LYSZa7_07895) - 1707771..1708532 (-) 762 WP_128697953.1 DUF2334 domain-containing protein -
  LYSZa7_RS07900 (LYSZa7_07900) - 1708525..1709640 (-) 1116 WP_003110035.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55491.79 Da        Isoelectric Point: 5.5542

>NTDB_id=422146 LYSZa7_RS07870 WP_200200342.1 1703524..1704966(+) (sbcB) [Pseudomonas aeruginosa strain LYSZa7]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTVLYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNAAERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=422146 LYSZa7_RS07870 WP_200200342.1 1703524..1704966(+) (sbcB) [Pseudomonas aeruginosa strain LYSZa7]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCCCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCCCACCCTATGGCTTGCCTGATCACCGGCATCACTCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAACTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACTGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCGAACGGCCTGGAGCATGGCCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAGTTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCCCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAGGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGTTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGTGCTATATGG
CGAAGAGAGTTTCTCCGCCAGCGACGACCCCGAACAACAGTTGTATGACGGATTTATTGGCGATCGGGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGCTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGCGGCCGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.882

88.542

0.442

Multiple sequence alignment