Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   G0027_RS05665 Genome accession   NZ_CP048654
Coordinates   1178846..1179724 (-) Length   292 a.a.
NCBI ID   WP_005182159.1    Uniprot ID   N9KSY6
Organism   Acinetobacter indicus strain C15_T     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1173846..1184724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0027_RS05645 (G0027_05650) miaB 1175397..1176851 (+) 1455 WP_104472822.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  G0027_RS05650 (G0027_05655) - 1176893..1177966 (+) 1074 WP_180192068.1 PhoH family protein -
  G0027_RS05655 (G0027_05660) ybeY 1177986..1178468 (+) 483 WP_163169944.1 rRNA maturation RNase YbeY -
  G0027_RS05660 (G0027_05665) - 1178559..1178849 (+) 291 WP_163169943.1 antibiotic biosynthesis monooxygenase -
  G0027_RS05665 (G0027_05670) tonB2 1178846..1179724 (-) 879 WP_005182159.1 energy transducer TonB Machinery gene
  G0027_RS05670 (G0027_05675) - 1179964..1180647 (+) 684 WP_160255734.1 hypothetical protein -
  G0027_RS05675 (G0027_05680) - 1180801..1181514 (+) 714 WP_005182145.1 DUF3108 domain-containing protein -
  G0027_RS05680 (G0027_05685) - 1181604..1182179 (+) 576 WP_005182137.1 xanthine phosphoribosyltransferase -
  G0027_RS05685 (G0027_05690) - 1182396..1182776 (+) 381 WP_005182135.1 hypothetical protein -
  G0027_RS05690 (G0027_05695) wrbA 1183318..1183914 (-) 597 WP_104470746.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33024.72 Da        Isoelectric Point: 9.1867

>NTDB_id=422114 G0027_RS05665 WP_005182159.1 1178846..1179724(-) (tonB2) [Acinetobacter indicus strain C15_T]
MLKKFHFAPLTQQWWKDPLFGTVLTLAALSHLAVLTVQFVMPQQSDAAVKEIAVSLRPSATEIKDADFLAQADQQGSGTF
REAHRMSSDMPAPMIEQSAGDQQLESLERLQQQRELSFEEKVLMTTLSWQKQAAENQRKKALEELNSQFQAKAAMVASLE
AQYLQRQQNFSRQQKIKTVDGIQAKQDVAAGYLEKFRQKVEFYGNRYYPEAAKQQQLAGEVRLMVILNANGGIRAIRLIE
SSGHAMLDEAAKASVRKAAPFGAFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 879 bp        

>NTDB_id=422114 G0027_RS05665 WP_005182159.1 1178846..1179724(-) (tonB2) [Acinetobacter indicus strain C15_T]
ATGTTAAAGAAATTTCATTTTGCACCTTTGACGCAGCAGTGGTGGAAAGATCCACTATTTGGCACCGTACTGACGCTGGC
GGCACTTTCGCATCTGGCTGTGTTAACGGTGCAATTTGTCATGCCACAGCAAAGCGATGCCGCGGTCAAGGAAATTGCGG
TCAGCTTAAGGCCAAGTGCCACCGAAATTAAGGACGCCGACTTTTTAGCACAGGCCGACCAGCAGGGTTCTGGCACCTTC
CGGGAAGCGCACCGCATGTCCAGCGATATGCCCGCACCAATGATTGAACAGAGTGCCGGTGATCAGCAGCTGGAAAGTCT
GGAGCGTTTGCAGCAGCAGCGTGAACTGAGCTTTGAAGAAAAAGTGCTAATGACTACCTTAAGCTGGCAAAAGCAGGCGG
CGGAAAACCAGCGTAAAAAAGCGCTAGAAGAATTGAACAGCCAGTTTCAGGCCAAAGCGGCGATGGTGGCCAGTCTAGAA
GCGCAGTATTTACAGCGTCAGCAAAATTTCAGCCGTCAGCAGAAAATTAAAACCGTAGATGGAATTCAGGCCAAGCAGGA
TGTCGCAGCCGGTTATCTGGAAAAATTCCGTCAGAAAGTCGAATTTTATGGTAACCGTTATTATCCGGAAGCGGCCAAGC
AGCAACAGTTGGCCGGTGAGGTGCGTTTAATGGTGATTTTAAATGCCAACGGTGGGATTCGTGCGATTCGTTTAATTGAA
AGCTCGGGGCATGCCATGCTGGATGAAGCTGCCAAGGCTTCTGTGCGTAAAGCTGCTCCTTTTGGTGCCTTTGATGCCAA
GATGAAAGATATTTCCGAGCTACGCATTATCCGGACCTGGCGTTTTGACCCGGCTGAGGCGGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KSY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.344

95.548

0.729

Multiple sequence alignment