Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   G0027_RS01335 Genome accession   NZ_CP048654
Coordinates   289002..289637 (-) Length   211 a.a.
NCBI ID   WP_104472233.1    Uniprot ID   -
Organism   Acinetobacter indicus strain C15_T     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 284002..294637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0027_RS01305 (G0027_01305) - 284387..284818 (-) 432 WP_127801722.1 SRPBCC family protein -
  G0027_RS01310 (G0027_01310) tadA 284876..285397 (-) 522 WP_127799402.1 tRNA adenosine(34) deaminase TadA -
  G0027_RS01315 (G0027_01315) - 285401..286525 (-) 1125 WP_005177517.1 enoyl-CoA hydratase/isomerase family protein -
  G0027_RS01320 (G0027_01320) ung 286522..287235 (-) 714 WP_005177514.1 uracil-DNA glycosylase -
  G0027_RS01325 (G0027_01325) - 287277..287873 (-) 597 WP_005177512.1 6-carboxytetrahydropterin synthase -
  G0027_RS01330 (G0027_01330) gspK 288022..288981 (-) 960 WP_171457073.1 type II secretion system minor pseudopilin GspK -
  G0027_RS01335 (G0027_01335) xcpW 289002..289637 (-) 636 WP_104472233.1 type II secretion system minor pseudopilin GspJ Machinery gene
  G0027_RS01340 (G0027_01340) xcpV 289634..290005 (-) 372 WP_227554686.1 type II secretion system protein Machinery gene
  G0027_RS01345 (G0027_01345) - 290115..290687 (-) 573 WP_180191874.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  G0027_RS01350 (G0027_01350) - 290693..291307 (-) 615 WP_016658223.1 TetR/AcrR family transcriptional regulator -
  G0027_RS01355 (G0027_01355) - 291367..292140 (-) 774 WP_180191875.1 TatD family hydrolase -
  G0027_RS01360 (G0027_01360) - 292170..292511 (-) 342 WP_005177501.1 PilZ domain-containing protein -
  G0027_RS01365 (G0027_01365) - 292523..293506 (-) 984 WP_075166783.1 DNA polymerase III subunit delta' -
  G0027_RS01370 (G0027_01370) kdsB 293515..294279 (-) 765 WP_180191876.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24092.39 Da        Isoelectric Point: 6.4849

>NTDB_id=422106 G0027_RS01335 WP_104472233.1 289002..289637(-) (xcpW) [Acinetobacter indicus strain C15_T]
MIKAKRGFTLVELLVAIAIFAVLSALGWKVFDYLVKVKDRNQWHEQQLEGLQGAYQQILRDSIQIVPLTANINNDIQPAL
VLQNGRFNFSKTGVTDPLQQGIAPTERIEYQYRADEQKLYRLKYANLHQSGQDQPVSSVLLGDVSQFQVSVLNPQELSNW
PDSSIDLNDDQQKRKLPKGIKINLTVQDVQYEWIFSLLNTDFLKSDNKTTS

Nucleotide


Download         Length: 636 bp        

>NTDB_id=422106 G0027_RS01335 WP_104472233.1 289002..289637(-) (xcpW) [Acinetobacter indicus strain C15_T]
ATGATTAAGGCTAAACGCGGATTTACCCTGGTCGAACTGCTGGTGGCCATTGCCATCTTTGCGGTGCTGTCTGCCTTGGG
TTGGAAAGTATTTGATTATCTGGTCAAGGTCAAAGACCGTAACCAGTGGCATGAACAGCAGTTAGAAGGATTGCAGGGTG
CCTATCAGCAAATTTTACGTGATAGCATTCAGATTGTGCCGCTGACCGCCAACATCAATAATGATATTCAGCCAGCTTTG
GTATTACAAAACGGCCGTTTTAATTTTAGCAAGACCGGTGTGACCGATCCTTTGCAGCAGGGCATTGCCCCCACTGAACG
GATTGAATATCAGTACCGGGCCGACGAACAAAAACTGTATCGTCTGAAATATGCCAATTTGCATCAGTCCGGGCAGGATC
AGCCGGTTTCCAGCGTGTTATTGGGCGATGTTAGCCAATTTCAGGTCAGTGTGCTGAATCCGCAGGAACTGAGTAACTGG
CCAGACAGCAGTATTGACTTAAATGATGATCAACAAAAACGTAAACTGCCAAAAGGCATTAAAATAAATTTAACCGTACA
AGATGTACAATATGAATGGATTTTTAGCCTGTTAAATACCGACTTCCTGAAATCAGACAATAAAACCACATCATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(60-194)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

61.735

92.891

0.573

Multiple sequence alignment