Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ICN52_RS07985 Genome accession   NZ_CP061537
Coordinates   1572175..1573680 (-) Length   501 a.a.
NCBI ID   WP_002793777.1    Uniprot ID   -
Organism   Campylobacter coli strain PSU-32     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1567175..1578680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICN52_RS07955 (ICN52_07955) - 1567418..1568158 (-) 741 WP_002778542.1 TerC family protein -
  ICN52_RS07960 (ICN52_07960) - 1568299..1569015 (+) 717 WP_002793774.1 ankyrin repeat domain-containing protein -
  ICN52_RS07965 (ICN52_07965) - 1569181..1569417 (+) 237 WP_002778540.1 hypothetical protein -
  ICN52_RS07970 (ICN52_07970) purN 1569555..1570130 (-) 576 WP_002778539.1 phosphoribosylglycinamide formyltransferase -
  ICN52_RS07975 (ICN52_07975) - 1570121..1571491 (-) 1371 WP_002783577.1 bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase -
  ICN52_RS07980 (ICN52_07980) - 1571475..1572173 (-) 699 WP_002778537.1 NYN domain-containing protein -
  ICN52_RS07985 (ICN52_07985) comM 1572175..1573680 (-) 1506 WP_002793777.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ICN52_RS07990 (ICN52_07990) def 1573677..1574204 (-) 528 WP_002778535.1 peptide deformylase -
  ICN52_RS07995 (ICN52_07995) clpP 1574232..1574816 (-) 585 WP_002783575.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  ICN52_RS08000 (ICN52_08000) tig 1574816..1576141 (-) 1326 WP_002793779.1 trigger factor -
  ICN52_RS08005 (ICN52_08005) folE 1576262..1576834 (+) 573 WP_002778530.1 GTP cyclohydrolase I FolE -
  ICN52_RS08010 (ICN52_08010) fliI 1576834..1578219 (+) 1386 WP_002778528.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56633.73 Da        Isoelectric Point: 9.0071

>NTDB_id=422099 ICN52_RS07985 WP_002793777.1 1572175..1573680(-) (comM) [Campylobacter coli strain PSU-32]
MKKLKCVSFDENLDIIDVESTFTRGLPNLSIVGLANIAIKESIERIKATLLTCNFSFPAKKITINLSPSGIPKKGSHFDL
VIATLILLQNEDFDDFFVVGELGLDGSIKSTNELFSLLLFLSTKVKSAKVVVPKNIALKASMIPNLKIYGLEHLNEVIEF
FKEKNYEKFKFTQSHPLFANPLIIENEIFIKNHYFELDFKDIKGQEKAKRACLIAALGMHNILFEGSPGSGKSMCAKRLV
EIMPPQSLNEVLMQNAYMSLNSKDCEFTQKRALRHPHHTSTRASIFGGGAKNAKIGEIALANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKTTYETKFSFVAAQNPCPCGNLFSKNLSCVCSENEIKRYKNHISAPIMDRIDLYVAMDEISK
DDKSSINSKEMSERILKAFIFGKKRGQKEFNGKLNDTELQKFCILEKDAKDTLDLAISRYNLSQRALNKILKVSRSIADF
EEKELLSKNHILEALSFRMRS

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=422099 ICN52_RS07985 WP_002793777.1 1572175..1573680(-) (comM) [Campylobacter coli strain PSU-32]
ATGAAAAAATTAAAATGTGTAAGCTTTGATGAGAATTTAGATATCATCGATGTAGAGTCTACATTTACAAGAGGCTTACC
TAATTTAAGCATAGTCGGACTTGCAAATATTGCAATTAAAGAAAGTATCGAGCGTATCAAAGCCACACTTTTAACTTGCA
ATTTTTCATTTCCTGCTAAAAAAATCACCATCAATCTTAGCCCTTCAGGAATTCCAAAAAAAGGTTCTCATTTTGATTTA
GTTATCGCTACGCTTATATTGTTGCAAAATGAAGACTTTGATGATTTTTTTGTGGTAGGCGAGCTTGGTCTTGATGGAAG
TATCAAAAGCACCAATGAGCTTTTTTCTTTACTTTTATTTTTATCCACAAAGGTAAAAAGTGCAAAAGTTGTAGTCCCAA
AAAATATAGCTCTAAAAGCTTCTATGATACCCAATCTAAAAATTTATGGACTTGAGCATTTAAATGAAGTGATTGAATTT
TTTAAAGAAAAAAACTATGAGAAATTCAAATTCACCCAAAGCCATCCTTTATTTGCAAATCCTTTGATTATAGAAAATGA
AATTTTTATTAAAAATCATTATTTTGAACTTGATTTTAAAGATATCAAAGGACAAGAAAAAGCTAAAAGAGCTTGTTTGA
TAGCAGCACTAGGTATGCACAATATACTTTTTGAAGGAAGTCCAGGAAGTGGCAAAAGTATGTGTGCAAAACGCCTTGTT
GAAATCATGCCTCCACAAAGTTTAAATGAGGTTTTAATGCAAAATGCTTATATGTCTTTAAATTCTAAAGATTGCGAATT
TACGCAAAAAAGAGCCTTAAGACACCCTCATCATACCTCTACAAGAGCTAGTATTTTTGGTGGTGGAGCAAAAAATGCGA
AGATAGGTGAAATCGCTCTAGCTAATGGTGGAGTTTTATTTTTTGATGAATTTCCTCATTTTAACAAACAGATTATCGAA
AGTCTAAGAGAACCTCTAGAAGATCATAAAATTCATATTTCAAGAGTCAATTCAAAAACCACTTATGAAACCAAATTCAG
TTTTGTTGCCGCTCAAAATCCTTGTCCTTGTGGAAATTTATTTTCTAAAAATCTGTCTTGCGTTTGTAGTGAAAATGAGA
TTAAAAGGTATAAAAATCACATTTCAGCCCCTATTATGGATAGAATTGATCTTTATGTAGCTATGGATGAGATCAGCAAA
GATGATAAGTCAAGTATAAATTCAAAAGAAATGAGTGAAAGAATTTTAAAGGCTTTTATCTTTGGCAAAAAACGCGGCCA
AAAAGAATTTAATGGCAAATTAAACGATACAGAATTGCAAAAATTTTGTATTTTAGAAAAAGATGCCAAGGATACTTTGG
ATTTAGCCATTTCGCGTTATAATCTTTCACAAAGAGCTTTAAATAAAATTTTAAAAGTTTCAAGATCTATTGCAGATTTT
GAAGAAAAAGAACTTCTTAGTAAAAATCATATTTTAGAAGCTTTGAGTTTTAGGATGAGGAGTTAA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)

Subunit ChlI of Mg-chelatase (ChlI)

(18-135)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

46.493

99.601

0.463