Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   ICN52_RS05655 Genome accession   NZ_CP061537
Coordinates   1120040..1120420 (-) Length   126 a.a.
NCBI ID   WP_002776373.1    Uniprot ID   A0ABN0ERI9
Organism   Campylobacter coli strain PSU-32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1115040..1125420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICN52_RS05630 (ICN52_05630) aspS 1115553..1117304 (+) 1752 WP_002781656.1 aspartate--tRNA ligase -
  ICN52_RS05635 (ICN52_05635) - 1117301..1117876 (+) 576 WP_002781658.1 adenylate kinase -
  ICN52_RS05640 (ICN52_05640) ppa 1117886..1118404 (+) 519 WP_002776378.1 inorganic diphosphatase -
  ICN52_RS05645 (ICN52_05645) msrA 1118452..1118952 (+) 501 WP_002793323.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ICN52_RS05650 (ICN52_05650) - 1119175..1120029 (-) 855 WP_370323062.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ICN52_RS05655 (ICN52_05655) dprB 1120040..1120420 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX Machinery gene
  ICN52_RS05660 (ICN52_05660) dprA 1120417..1121187 (-) 771 WP_002781662.1 DNA-processing protein DprA Machinery gene
  ICN52_RS05665 (ICN52_05665) - 1121177..1122229 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  ICN52_RS05670 (ICN52_05670) ilvC 1122232..1123254 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  ICN52_RS05675 (ICN52_05675) - 1123377..1125311 (+) 1935 WP_002793328.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13949.38 Da        Isoelectric Point: 9.5520

>NTDB_id=422091 ICN52_RS05655 WP_002776373.1 1120040..1120420(-) (dprB) [Campylobacter coli strain PSU-32]
MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNLLQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEF
DKEIRFVDESGTSKEALGYGVANTRKKDAKLDSLAALIMIKDYFGI

Nucleotide


Download         Length: 381 bp        

>NTDB_id=422091 ICN52_RS05655 WP_002776373.1 1120040..1120420(-) (dprB) [Campylobacter coli strain PSU-32]
ATGAGAGCTTTGGCCTTAGATGTGGGTTTAAAGCGTATAGGCGTGGCGCTTTGTATAGATAAAATCGCCATTCCTTTAGA
AGGTATAATCAGAAAAAACCGCAACCAAGCTGCAAATGAAGTTAAAAATTTACTTCAAATTCATGATATTTCTTTATTGA
TTGTAGGTATTCCTAAGGGAGGATCGAGCGAAGAAGAAATGACAAGGCGTATCAAGCATTTTGTATCTTTGCTTGAATTC
GATAAAGAAATTCGCTTTGTAGATGAAAGCGGAACAAGTAAAGAAGCTTTAGGATATGGTGTGGCTAATACACGCAAAAA
AGATGCCAAGCTAGACTCTTTAGCAGCTTTAATCATGATAAAGGATTATTTTGGAATATAA

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

42.063

100

0.421