Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G3273_RS15105 Genome accession   NZ_CP048647
Coordinates   3136918..3137547 (-) Length   209 a.a.
NCBI ID   WP_000839144.1    Uniprot ID   -
Organism   Escherichia coli strain GW-AmxH19     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3131918..3142547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3273_RS15090 (G3273_15090) helD 3132160..3134214 (-) 2055 WP_001350178.1 DNA helicase IV -
  G3273_RS15095 (G3273_15095) yccF 3134337..3134783 (+) 447 WP_001261236.1 YccF domain-containing protein -
  G3273_RS15100 (G3273_15100) yccS 3134793..3136955 (+) 2163 WP_000875041.1 YccS family putative transporter -
  G3273_RS15105 (G3273_15105) sxy/tfoX 3136918..3137547 (-) 630 WP_000839144.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G3273_RS15110 (G3273_15110) sulA 3137766..3138275 (+) 510 WP_000288694.1 SOS-induced cell division inhibitor SulA -
  G3273_RS15115 (G3273_15115) ompA 3138631..3139671 (+) 1041 WP_001350588.1 porin OmpA -
  G3273_RS15120 (G3273_15120) matP 3139749..3140201 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  G3273_RS15125 (G3273_15125) ycbZ 3140387..3142147 (+) 1761 WP_000156501.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24159.07 Da        Isoelectric Point: 9.2180

>NTDB_id=422062 G3273_RS15105 WP_000839144.1 3136918..3137547(-) (sxy/tfoX) [Escherichia coli strain GW-AmxH19]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=422062 G3273_RS15105 WP_000839144.1 3136918..3137547(-) (sxy/tfoX) [Escherichia coli strain GW-AmxH19]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment