Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H5V41_RS13235 Genome accession   NZ_CP061530
Coordinates   2675314..2676738 (+) Length   474 a.a.
NCBI ID   WP_190811885.1    Uniprot ID   -
Organism   Escherichia coli strain WEM25     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2670314..2681738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H5V41_RS13185 (H5V41_13185) - 2670624..2670938 (+) 315 WP_190811883.1 hypothetical protein -
  H5V41_RS13190 (H5V41_13190) - 2670955..2671119 (+) 165 WP_001214446.1 DUF2737 family protein -
  H5V41_RS13195 (H5V41_13195) - 2671116..2671634 (+) 519 WP_190811884.1 hNH endonuclease -
  H5V41_RS13200 (H5V41_13200) - 2671631..2671903 (+) 273 WP_001549480.1 hypothetical protein -
  H5V41_RS23995 - 2671900..2672361 (+) 462 WP_097439557.1 ead/Ea22-like family protein -
  H5V41_RS24000 - 2672366..2673259 (+) 894 WP_251003644.1 DUF551 domain-containing protein -
  H5V41_RS13220 (H5V41_13220) - 2673360..2673704 (+) 345 WP_001281194.1 hypothetical protein -
  H5V41_RS13225 (H5V41_13225) - 2673782..2673973 (+) 192 WP_000132739.1 AlpA family phage regulatory protein -
  H5V41_RS13230 (H5V41_13230) - 2673954..2675132 (-) 1179 WP_032178602.1 site-specific integrase -
  H5V41_RS13235 (H5V41_13235) sbcB 2675314..2676738 (+) 1425 WP_190811885.1 exodeoxyribonuclease I Machinery gene
  H5V41_RS13240 (H5V41_13240) tsuB 2676781..2677008 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H5V41_RS13245 (H5V41_13245) tsuA 2677022..2678079 (-) 1058 Protein_2621 thiosulfate utilization transporter TsuA/YeeE -
  H5V41_RS13250 (H5V41_13250) plaP 2678257..2679615 (-) 1359 WP_190811886.1 putrescine/proton symporter PlaP -
  H5V41_RS13255 (H5V41_13255) yoeI 2679605..2679667 (-) 63 WP_010723108.1 membrane protein YoeI -
  H5V41_RS13260 (H5V41_13260) yeeY 2679882..2680811 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  H5V41_RS13265 (H5V41_13265) yeeZ 2680857..2681681 (-) 825 WP_000754763.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54281.60 Da        Isoelectric Point: 5.6070

>NTDB_id=422014 H5V41_RS13235 WP_190811885.1 2675314..2676738(+) (sbcB) [Escherichia coli strain WEM25]
MTGTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPLMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=422014 H5V41_RS13235 WP_190811885.1 2675314..2676738(+) (sbcB) [Escherichia coli strain WEM25]
ATGACAGGCACAGATAAACAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCATTTGCCGCCCGGATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGCAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCTGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGATAAA
CGGATTGAAAAACTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAATATG
CCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(12-187)

Exonuclease C-terminal (ExoI_SH3)

(211-471)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584