Detailed information
Bioinformatically predicted
Overview
| Name | fimT | Type | Machinery gene |
| Locus tag | GCO85_RS03380 | Genome accession | NZ_CP048618 |
| Coordinates | 706138..706845 (-) | Length | 235 a.a. |
| NCBI ID | WP_014841117.1 | Uniprot ID | - |
| Organism | Legionella pneumophila strain ERS1305867 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 701138..711845
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GCO85_RS03365 (GCO85_03375) | - | 704013..704525 (-) | 513 | WP_014841116.1 | pilus assembly protein | - |
| GCO85_RS03370 (GCO85_03380) | - | 704522..705589 (-) | 1068 | WP_011945792.1 | PilW family protein | - |
| GCO85_RS03375 (GCO85_03385) | pilV | 705586..706125 (-) | 540 | WP_011945793.1 | type IV pilus modification protein PilV | - |
| GCO85_RS03380 (GCO85_03390) | fimT | 706138..706845 (-) | 708 | WP_014841117.1 | GspH/FimT family pseudopilin | Machinery gene |
| GCO85_RS03385 (GCO85_03395) | - | 707066..707926 (-) | 861 | WP_011945795.1 | polysaccharide deacetylase family protein | - |
| GCO85_RS03390 (GCO85_03400) | - | 708102..709451 (-) | 1350 | WP_072368662.1 | lpg0634 family Dot/Icm T4SS effector | - |
| GCO85_RS03395 (GCO85_03405) | - | 709741..711222 (+) | 1482 | WP_061637152.1 | glycosyltransferase family 39 protein | - |
Sequence
Protein
Download Length: 235 a.a. Molecular weight: 24791.47 Da Isoelectric Point: 7.5607
>NTDB_id=421860 GCO85_RS03380 WP_014841117.1 706138..706845(-) (fimT) [Legionella pneumophila strain ERS1305867]
MNKVITESQKFTLRNVANMLLCVDASVLPAQSNIAQKIQTKGIMYNDLCKDSFDTEVPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNSRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWSNGALNCP
MNKVITESQKFTLRNVANMLLCVDASVLPAQSNIAQKIQTKGIMYNDLCKDSFDTEVPLNSNPLSIAGFTLVELLVTLSV
FAIILTLIVPSLRTMILNSRLTSNIDSLVSSLNYARGVALDRAVNVAVCPLGSPGSTACGANWSSGWIVVTQPVAGAPTL
LKSHQTSVNDPVITSNVSSVVFDPHGLSTTQSNFTMCDNRGNAFARSAMVLATGFVQSGTTPGQAVWSNGALNCP
Nucleotide
Download Length: 708 bp
>NTDB_id=421860 GCO85_RS03380 WP_014841117.1 706138..706845(-) (fimT) [Legionella pneumophila strain ERS1305867]
TTGAACAAAGTGATAACGGAATCACAAAAGTTCACTCTGCGCAACGTAGCTAATATGTTATTGTGTGTGGATGCTAGTGT
ATTGCCCGCACAATCTAATATAGCACAAAAGATACAAACAAAAGGCATAATGTACAATGATCTTTGTAAAGACAGCTTCG
ATACTGAGGTCCCTCTTAACAGCAACCCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCCATTATCTTAACTCTAATCGTCCCTTCATTAAGAACTATGATTTTGAATAGCCGTTTGACTTCAAACATCGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCAGTCAATGTGGCAGTATGTCCATTAGGTTCAC
CAGGTTCAACAGCCTGTGGAGCCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAGCACCAACGCTT
TTAAAATCGCACCAGACTTCAGTAAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGTAACTTCACTATGTGTGATAACCGAGGCAATGCGTTTGCCCGCTCGGCAATGGTTTTGGCCACTG
GATTTGTCCAATCAGGAACAACACCCGGCCAGGCAGTCTGGAGTAATGGAGCTCTGAACTGCCCTTAA
TTGAACAAAGTGATAACGGAATCACAAAAGTTCACTCTGCGCAACGTAGCTAATATGTTATTGTGTGTGGATGCTAGTGT
ATTGCCCGCACAATCTAATATAGCACAAAAGATACAAACAAAAGGCATAATGTACAATGATCTTTGTAAAGACAGCTTCG
ATACTGAGGTCCCTCTTAACAGCAACCCTCTTTCCATAGCCGGATTCACACTGGTTGAATTATTAGTAACCCTATCTGTT
TTTGCCATTATCTTAACTCTAATCGTCCCTTCATTAAGAACTATGATTTTGAATAGCCGTTTGACTTCAAACATCGACTC
ACTGGTAAGCTCATTAAACTATGCGCGTGGAGTGGCACTTGATCGGGCAGTCAATGTGGCAGTATGTCCATTAGGTTCAC
CAGGTTCAACAGCCTGTGGAGCCAACTGGAGCTCAGGATGGATAGTAGTGACCCAACCAGTAGCAGGAGCACCAACGCTT
TTAAAATCGCACCAGACTTCAGTAAATGATCCTGTTATCACTTCGAACGTATCCAGTGTTGTTTTTGACCCACATGGGTT
ATCAACAACCCAAAGTAACTTCACTATGTGTGATAACCGAGGCAATGCGTTTGCCCGCTCGGCAATGGTTTTGGCCACTG
GATTTGTCCAATCAGGAACAACACCCGGCCAGGCAGTCTGGAGTAATGGAGCTCTGAACTGCCCTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| fimT | Legionella pneumophila strain Lp02 |
97.021 |
100 |
0.97 |