Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   G3M72_RS06230 Genome accession   NZ_CP048604
Coordinates   1253674..1254303 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain PapRG-06-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1248674..1259303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M72_RS06215 (G3M72_06215) helD 1248916..1250970 (-) 2055 WP_047675448.1 DNA helicase IV -
  G3M72_RS06220 (G3M72_06220) yccF 1251093..1251539 (+) 447 WP_001261235.1 YccF domain-containing protein -
  G3M72_RS06225 (G3M72_06225) yccS 1251549..1253711 (+) 2163 WP_163388237.1 YccS family putative transporter -
  G3M72_RS06230 (G3M72_06230) sxy/tfoX 1253674..1254303 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  G3M72_RS06235 (G3M72_06235) sulA 1254522..1255031 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  G3M72_RS06240 (G3M72_06240) ompA 1255388..1256428 (+) 1041 WP_000750416.1 porin OmpA -
  G3M72_RS06245 (G3M72_06245) matP 1256504..1256956 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  G3M72_RS06250 (G3M72_06250) ycbZ 1257142..1258902 (+) 1761 WP_163388238.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=421757 G3M72_RS06230 WP_000839153.1 1253674..1254303(-) (sxy/tfoX) [Escherichia coli strain PapRG-06-3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=421757 G3M72_RS06230 WP_000839153.1 1253674..1254303(-) (sxy/tfoX) [Escherichia coli strain PapRG-06-3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCGCG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment