Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   G3M67_RS05845 Genome accession   NZ_CP048601
Coordinates   1250439..1251752 (-) Length   437 a.a.
NCBI ID   WP_163525135.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 27     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1245439..1256752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M67_RS05815 (G3M67_05815) nadC 1245902..1246723 (-) 822 WP_163525125.1 carboxylating nicotinate-nucleotide diphosphorylase -
  G3M67_RS05820 (G3M67_05820) nadA 1246723..1247733 (-) 1011 WP_163525127.1 quinolinate synthase NadA -
  G3M67_RS05825 (G3M67_05825) - 1247723..1248526 (-) 804 WP_163525129.1 phosphatidylserine decarboxylase -
  G3M67_RS05830 (G3M67_05830) - 1248520..1249026 (-) 507 WP_163525132.1 helix-turn-helix domain-containing protein -
  G3M67_RS05835 (G3M67_05835) - 1249039..1249533 (-) 495 WP_001895411.1 hypothetical protein -
  G3M67_RS05840 (G3M67_05840) mqnP 1249526..1250368 (-) 843 WP_240331342.1 menaquinone biosynthesis prenyltransferase MqnP -
  G3M67_RS05845 (G3M67_05845) comEC/comE3 1250439..1251752 (-) 1314 WP_163525135.1 ComEC/Rec2 family competence protein Machinery gene
  G3M67_RS05850 (G3M67_05850) - 1251749..1253215 (-) 1467 WP_163525137.1 replicative DNA helicase -
  G3M67_RS05855 (G3M67_05855) - 1253226..1254620 (-) 1395 WP_163525139.1 NAD(P)H-hydrate dehydratase -
  G3M67_RS05860 (G3M67_05860) crdS 1254623..1255825 (-) 1203 WP_163525645.1 copper-sensing histidine kinase CrdS -
  G3M67_RS05865 (G3M67_05865) crdR 1255791..1256432 (-) 642 WP_163525141.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50124.89 Da        Isoelectric Point: 9.8515

>NTDB_id=421715 G3M67_RS05845 WP_163525135.1 1250439..1251752(-) (comEC/comE3) [Helicobacter pylori strain GCT 27]
MKDKTFHGAFDLLSTPKEYSWCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTTIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKHNFKSHLRHFIDSAHSNALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFWMRSFQAIALS
VLVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDNVLSMPLTIPTISVSSPLWLLGAHLFLT
ILSARFFKVYLSMNGLSMGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=421715 G3M67_RS05845 WP_163525135.1 1250439..1251752(-) (comEC/comE3) [Helicobacter pylori strain GCT 27]
TTGAAAGATAAAACCTTTCATGGGGCGTTTGATTTGCTTTCAACCCCCAAAGAATACTCATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCGATCAACCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTGTTGCAATACCCTAAAACTAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCACGCACAATTTTTTGGCAAGATCAAGCCTTGCTC
GTTCTTAGAGTCTTTAAAATCATGCTTTTTTCAAACTTATTCTTTTTCTTTAACGCGAAAACACAATTTCAAATCGCATT
TGCGCCATTTCATTGATAGCGCCCATTCCAACGCTTTGGTGGGTAATTTGTATCGAGCGTTATTCATAGGGGATAGCTTG
AATAAAGACTTAAGGGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTTCATTTAGGGATTTT
GAGCGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTACAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTATTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCGTGCTTTTTTGGGGTAAGGATCTTGAGTTTTAAACTTTTGGTTTTAGCGTG
CTGTATCGCAATAGCGTTACTCCCTAAATTGCTTTTTAGTGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTGGATGCGATCTTTTCAAGCGATCGCTTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTGTTGGATAACG
TTCTAAGCATGCCTTTAACCATCCCCACGATTTCGGTTTCTTCGCCTTTATGGCTTTTGGGGGCGCATTTGTTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAGGTTTATTTAAGCATGAATGGTTTGAGCATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-381)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.364

100

0.934

Multiple sequence alignment