Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   G3M68_RS03510 Genome accession   NZ_CP048600
Coordinates   751044..751325 (-) Length   93 a.a.
NCBI ID   WP_001272690.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 43     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 746044..756325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M68_RS03490 (G3M68_03490) - 746761..748101 (-) 1341 WP_001876830.1 COG3014 family protein -
  G3M68_RS03500 (G3M68_03500) comB4 748416..750779 (-) 2364 WP_163497935.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  G3M68_RS03505 (G3M68_03505) comB3 750781..751044 (-) 264 WP_000584973.1 hypothetical protein Machinery gene
  G3M68_RS03510 (G3M68_03510) comB2 751044..751325 (-) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  G3M68_RS03515 (G3M68_03515) - 751470..752297 (-) 828 WP_163497936.1 DUF5718 family protein -
  G3M68_RS03520 (G3M68_03520) - 752389..753441 (-) 1053 WP_163497937.1 MnmA/TRMU family protein -
  G3M68_RS03525 (G3M68_03525) dnaG 753438..755117 (-) 1680 WP_163497938.1 DNA primase -
  G3M68_RS03530 (G3M68_03530) groES 755403..755759 (+) 357 WP_000671931.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10525.78 Da        Isoelectric Point: 9.1450

>NTDB_id=421692 G3M68_RS03510 WP_001272690.1 751044..751325(-) (comB2) [Helicobacter pylori strain GCT 43]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=421692 G3M68_RS03510 WP_001272690.1 751044..751325(-) (comB2) [Helicobacter pylori strain GCT 43]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCCATTT
ATGTGTGGAGGAATTTGGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment