Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   G3M69_RS06495 Genome accession   NZ_CP048599
Coordinates   1382801..1384114 (+) Length   437 a.a.
NCBI ID   WP_163563334.1    Uniprot ID   -
Organism   Helicobacter pylori strain GCT 97     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1377801..1389114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M69_RS06475 (G3M69_06475) crdR 1378120..1378761 (+) 642 WP_163563331.1 copper response regulator transcription factor CrdR -
  G3M69_RS06480 (G3M69_06480) crdS 1378727..1379929 (+) 1203 WP_163563518.1 copper-sensing histidine kinase CrdS -
  G3M69_RS06485 (G3M69_06485) - 1379932..1381332 (+) 1401 WP_163563332.1 NAD(P)H-hydrate dehydratase -
  G3M69_RS06490 (G3M69_06490) - 1381344..1382804 (+) 1461 WP_163563333.1 replicative DNA helicase -
  G3M69_RS06495 (G3M69_06495) comEC/comE3 1382801..1384114 (+) 1314 WP_163563334.1 ComEC/Rec2 family competence protein Machinery gene
  G3M69_RS06500 (G3M69_06500) mqnP 1384185..1385027 (+) 843 WP_240329097.1 menaquinone biosynthesis prenyltransferase MqnP -
  G3M69_RS06505 (G3M69_06505) - 1385020..1385514 (+) 495 WP_205424846.1 hypothetical protein -
  G3M69_RS06510 (G3M69_06510) - 1385527..1386033 (+) 507 WP_079363231.1 helix-turn-helix domain-containing protein -
  G3M69_RS06515 (G3M69_06515) - 1386027..1386830 (+) 804 WP_163563336.1 phosphatidylserine decarboxylase -
  G3M69_RS06520 (G3M69_06520) nadA 1386820..1387830 (+) 1011 WP_163563337.1 quinolinate synthase NadA -
  G3M69_RS06525 (G3M69_06525) nadC 1387830..1388651 (+) 822 WP_163563338.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50320.18 Da        Isoelectric Point: 9.8572

>NTDB_id=421674 G3M69_RS06495 WP_163563334.1 1382801..1384114(+) (comEC/comE3) [Helicobacter pylori strain GCT 97]
MKDKTFQGAFELLSTPKEYLWCGVVLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKNMI
FYTTIKEPLKNLQYRHAQFFGRIKSCSFLESLKSCFFQTYSFSLTRKHNFKSHLRHFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQQRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRILSFKLLVLACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKDSSFFKRSFQAIALS
VLVFLNMLIVAHVFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDNILSMPLTIPTISVFSPLWLLGAHLFLT
VLSARFFKVYLSMNVLSMGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=421674 G3M69_RS06495 WP_163563334.1 1382801..1384114(+) (comEC/comE3) [Helicobacter pylori strain GCT 97]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTTCAACCCCTAAAGAATACTTATGGTGTGGGGTTGTTTTAAG
CCTTTTGTTGGCAATCAATCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAAAACATGATC
TTTTACACCACCATTAAAGAGCCTTTAAAAAACCTTCAATACCGCCACGCGCAATTTTTTGGCAGGATCAAATCTTGCTC
GTTCTTAGAGTCTCTAAAATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACGCGAAAACACAATTTCAAATCGCATT
TGCGCCATTTCATTGACAGCGCTCATTCAAGCGCTTTGGTGGGTAATTTGTACCGAGCGCTTTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCTATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGTGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAACAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTGGGGTATTTGTTGCTATTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGATCTTGAGTTTTAAACTTTTGGTTTTAGCGTG
CTGTATCGCAATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAATTTTTTTTAAAGATTCTTCTTTTTTCAAGCGATCGTTTCAAGCGATCGCTTTAAGC
GTGTTAGTGTTTTTGAACATGCTCATTGTTGCGCATGTCTTTTTCCCTATGTTTTCGCCCTACCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGCTTATTCTTGCATGCGGTGGGTTTAGGGTCTTTGTTGGATAACA
TTCTAAGCATGCCTTTAACCATCCCCACGATTTCGGTTTTTTCGCCTTTATGGCTTTTAGGGGCGCATTTATTTTTAACG
GTTTTAAGCGCGCGTTTTTTTAAGGTTTATTTAAGCATGAATGTTTTGAGTATGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTGGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

93.135

100

0.931

Multiple sequence alignment