Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   G3M69_RS00550 Genome accession   NZ_CP048599
Coordinates   118611..118892 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain GCT 97     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 113611..123892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M69_RS00530 (G3M69_00530) - 114349..115689 (-) 1341 WP_163562720.1 COG3014 family protein -
  G3M69_RS00540 (G3M69_00540) comB4 115983..118346 (-) 2364 WP_163562721.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  G3M69_RS00545 (G3M69_00545) comB3 118348..118611 (-) 264 WP_078216260.1 competence protein ComB Machinery gene
  G3M69_RS00550 (G3M69_00550) comB2 118611..118892 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  G3M69_RS00555 (G3M69_00555) - 119039..119866 (-) 828 WP_163562722.1 DUF5718 family protein -
  G3M69_RS00560 (G3M69_00560) - 119960..121012 (-) 1053 WP_163562723.1 MnmA/TRMU family protein -
  G3M69_RS00565 (G3M69_00565) dnaG 121009..122688 (-) 1680 WP_163562724.1 DNA primase -
  G3M69_RS00570 (G3M69_00570) groES 122977..123333 (+) 357 WP_000671934.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=421662 G3M69_RS00550 WP_001272686.1 118611..118892(-) (comB2) [Helicobacter pylori strain GCT 97]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=421662 G3M69_RS00550 WP_001272686.1 118611..118892(-) (comB2) [Helicobacter pylori strain GCT 97]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCCATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment