Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   F8267_RS16895 Genome accession   NZ_CP048598
Coordinates   3603269..3603892 (+) Length   207 a.a.
NCBI ID   WP_026612357.1    Uniprot ID   A0AAW9LN46
Organism   Klebsiella aerogenes strain AUH-KAM-9     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3598269..3608892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F8267_RS16875 - 3598418..3600175 (-) 1758 WP_048230746.1 Lon protease family protein -
  F8267_RS16880 matP 3600361..3600813 (+) 453 WP_015367432.1 macrodomain Ter protein MatP -
  F8267_RS16885 ompA 3600905..3601957 (-) 1053 WP_026612358.1 porin OmpA -
  F8267_RS16890 sulA 3602310..3602819 (-) 510 WP_020079240.1 SOS-induced cell division inhibitor SulA -
  F8267_RS16895 sxy/tfoX 3603269..3603892 (+) 624 WP_026612357.1 TfoX/Sxy family DNA transformation protein Regulator
  F8267_RS16900 yccS 3603880..3606015 (-) 2136 WP_020079239.1 YccS family putative transporter -
  F8267_RS16905 - 3606033..3606479 (-) 447 WP_020079238.1 YccF domain-containing protein -
  F8267_RS16910 helD 3606603..3608657 (+) 2055 WP_020079237.1 DNA helicase IV -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23612.33 Da        Isoelectric Point: 10.0181

>NTDB_id=421654 F8267_RS16895 WP_026612357.1 3603269..3603892(+) (sxy/tfoX) [Klebsiella aerogenes strain AUH-KAM-9]
MKKISKLRFLQFQECLSPLGKISSRPLFGGYSLAIENTVFAMVAEGEIYLRVCEQSASYRVEHHSPMLMMRKNGRPVALK
YYRIDEALWQDSKMLFHLSQLSLHSARSEKQHQRDSGRLKNLPNISFHMELMLIHAGITDVKMLRTLGAEKSWLKLREHN
KGISINVLESLAGAIAGIHSAALPAQRRQELREWANTQGYSVEDYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=421654 F8267_RS16895 WP_026612357.1 3603269..3603892(+) (sxy/tfoX) [Klebsiella aerogenes strain AUH-KAM-9]
ATGAAGAAAATTTCAAAATTACGGTTCCTCCAGTTTCAGGAGTGCCTTTCCCCCTTAGGTAAAATCAGTAGCCGGCCTTT
ATTCGGCGGGTATAGTCTGGCGATTGAAAATACCGTATTCGCCATGGTGGCTGAGGGCGAAATCTATCTTAGGGTTTGCG
AACAAAGCGCCTCTTATCGGGTTGAACATCACAGCCCGATGCTGATGATGCGCAAGAATGGCCGGCCAGTGGCCTTAAAG
TATTACCGGATAGATGAAGCACTATGGCAGGACAGTAAAATGCTGTTTCACCTATCGCAGCTGTCATTGCATTCGGCGCG
AAGCGAAAAGCAGCATCAGCGTGATTCCGGCAGACTAAAGAATTTGCCTAATATCAGCTTCCATATGGAGTTGATGTTGA
TCCATGCCGGAATAACCGATGTGAAAATGCTGCGTACACTCGGGGCGGAAAAGAGCTGGTTAAAATTGAGAGAGCATAAT
AAAGGAATATCAATCAATGTCCTTGAGTCCCTGGCGGGCGCGATTGCCGGCATTCATTCCGCCGCGCTCCCGGCGCAGCG
GCGCCAGGAGCTACGGGAGTGGGCTAATACACAAGGATACAGCGTGGAGGATTATTCCGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.777

95.169

0.493

Multiple sequence alignment