Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ECO55CA74_RS22810 Genome accession   NC_017656
Coordinates   4527634..4528626 (+) Length   330 a.a.
NCBI ID   WP_000224473.1    Uniprot ID   -
Organism   Escherichia coli O55:H7 str. RM12579     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4522634..4533626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECO55CA74_RS22785 (ECO55CA74_21830) rbsD 4522758..4523177 (+) 420 WP_001301979.1 D-ribose pyranase -
  ECO55CA74_RS22790 (ECO55CA74_21835) rbsA 4523185..4524690 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  ECO55CA74_RS22795 (ECO55CA74_21840) rbsC 4524695..4525660 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  ECO55CA74_RS22800 (ECO55CA74_21845) rbsB 4525685..4526575 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ECO55CA74_RS22805 (ECO55CA74_21850) rbsK 4526701..4527630 (+) 930 WP_001418302.1 ribokinase -
  ECO55CA74_RS22810 (ECO55CA74_21855) cytR 4527634..4528626 (+) 993 WP_000224473.1 ribose operon transcriptional repressor RbsR Regulator
  ECO55CA74_RS22815 (ECO55CA74_21860) mdtD 4528592..4530019 (-) 1428 WP_001280821.1 multidrug transporter subunit MdtD -
  ECO55CA74_RS22820 (ECO55CA74_21865) yieP 4530042..4530734 (-) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36625.93 Da        Isoelectric Point: 5.2183

>NTDB_id=42165 ECO55CA74_RS22810 WP_000224473.1 4527634..4528626(+) (cytR) [Escherichia coli O55:H7 str. RM12579]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNEAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=42165 ECO55CA74_RS22810 WP_000224473.1 4527634..4528626(+) (cytR) [Escherichia coli O55:H7 str. RM12579]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGAAGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACGATCCATCAACCAAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.37
  cytR Vibrio cholerae C6706

38.762

93.03

0.361