Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   FY134_RS27990 Genome accession   NZ_CP048559
Coordinates   922534..922647 (-) Length   37 a.a.
NCBI ID   WP_162688082.1    Uniprot ID   -
Organism   Agrobacterium fabrum strain Kin001     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 917534..927647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY134_RS18235 (FY134_18140) - 918597..919610 (+) 1014 WP_111806513.1 2-hydroxyacid dehydrogenase -
  FY134_RS18240 (FY134_18145) - 919718..920863 (+) 1146 WP_092732318.1 alpha-hydroxy acid oxidase -
  FY134_RS18245 (FY134_18150) - 920894..921238 (-) 345 WP_111806515.1 hypothetical protein -
  FY134_RS18250 (FY134_18155) - 921432..922412 (+) 981 WP_111806517.1 helix-turn-helix domain-containing GNAT family N-acetyltransferase -
  FY134_RS27990 (FY134_18160) pilJ 922534..922647 (-) 114 WP_162688082.1 methyl-accepting chemotaxis protein Machinery gene
  FY134_RS18260 (FY134_18165) - 922668..924167 (-) 1500 WP_262518863.1 FGGY-family carbohydrate kinase -
  FY134_RS18265 (FY134_18170) - 924160..925002 (-) 843 WP_035215305.1 class I fructose-bisphosphate aldolase -
  FY134_RS18270 (FY134_18175) - 925005..926729 (-) 1725 WP_111806520.1 glycerol-3-phosphate dehydrogenase/oxidase -

Sequence

Protein


Download         Length: 37 a.a.        Molecular weight: 3688.18 Da        Isoelectric Point: 4.4258

>NTDB_id=421595 FY134_RS27990 WP_162688082.1 922534..922647(-) (pilJ) [Agrobacterium fabrum strain Kin001]
MIGVIAFQRNLLALNAGVETARADEAGNGFAAVAQGA

Nucleotide


Download         Length: 114 bp        

>NTDB_id=421595 FY134_RS27990 WP_162688082.1 922534..922647(-) (pilJ) [Agrobacterium fabrum strain Kin001]
ATGATCGGCGTGATCGCCTTCCAGAGGAATTTGCTGGCGCTCAACGCTGGGGTAGAAACGGCGCGGGCCGACGAGGCGGG
CAACGGTTTTGCCGCCGTGGCGCAGGGGGCGTGA

Domains

Predicted by InterproScan.

Methyl-accepting chemotaxis protein (MCP) signalling domain (MCPsignal)

(2-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Synechocystis sp. PCC 6803

61.765

91.892

0.568

Multiple sequence alignment