Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ECO55CA74_RS16870 Genome accession   NC_017656
Coordinates   3339096..3340088 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli O55:H7 str. RM12579     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3334096..3345088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECO55CA74_RS16845 (ECO55CA74_16110) pphB 3335458..3336114 (+) 657 WP_001141350.1 protein-serine/threonine phosphatase -
  ECO55CA74_RS16850 (ECO55CA74_16115) - 3336155..3336391 (-) 237 WP_000562982.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  ECO55CA74_RS16855 (ECO55CA74_16120) - 3336402..3337829 (-) 1428 WP_000863201.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  ECO55CA74_RS16860 (ECO55CA74_16125) - 3337829..3338422 (-) 594 WP_000767724.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  ECO55CA74_RS16865 (ECO55CA74_16130) - 3338569..3338976 (+) 408 WP_001208062.1 MarR family transcriptional regulator -
  ECO55CA74_RS16870 (ECO55CA74_16135) rpoS 3339096..3340088 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  ECO55CA74_RS16875 (ECO55CA74_16140) nlpD 3340151..3341245 (-) 1095 WP_306256364.1 murein hydrolase activator NlpD -
  ECO55CA74_RS16880 (ECO55CA74_16145) pcm 3341430..3342056 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  ECO55CA74_RS16885 (ECO55CA74_16150) surE 3342050..3342811 (-) 762 WP_001295182.1 5'/3'-nucleotidase SurE -
  ECO55CA74_RS16890 (ECO55CA74_16155) truD 3342792..3343841 (-) 1050 WP_000568933.1 tRNA pseudouridine(13) synthase TruD -
  ECO55CA74_RS16895 (ECO55CA74_16160) ispF 3343838..3344317 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ECO55CA74_RS16900 (ECO55CA74_16165) ispD 3344317..3345027 (-) 711 WP_000246159.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=42142 ECO55CA74_RS16870 WP_000081550.1 3339096..3340088(-) (rpoS) [Escherichia coli O55:H7 str. RM12579]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=42142 ECO55CA74_RS16870 WP_000081550.1 3339096..3340088(-) (rpoS) [Escherichia coli O55:H7 str. RM12579]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715

Multiple sequence alignment