Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   GXM22_RS07995 Genome accession   NZ_CP048437
Coordinates   1647946..1649757 (+) Length   603 a.a.
NCBI ID   WP_099357177.1    Uniprot ID   -
Organism   Faecalibacterium duncaniae strain JCM 31915     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1642946..1654757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GXM22_RS07965 (GXM22_07970) nth 1643001..1643702 (+) 702 WP_005934391.1 endonuclease III -
  GXM22_RS07970 (GXM22_07975) - 1643699..1644031 (+) 333 WP_005934393.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  GXM22_RS07975 (GXM22_07980) - 1644169..1644486 (+) 318 WP_005934395.1 helix-turn-helix transcriptional regulator -
  GXM22_RS07980 (GXM22_07985) - 1644483..1644989 (+) 507 WP_097771920.1 DUF2812 domain-containing protein -
  GXM22_RS07985 (GXM22_07990) - 1645142..1645642 (+) 501 WP_005934397.1 MarR family transcriptional regulator -
  GXM22_RS07990 (GXM22_07995) - 1645635..1647944 (+) 2310 WP_099357178.1 ABC transporter ATP-binding protein -
  GXM22_RS07995 (GXM22_08000) rcrQ 1647946..1649757 (+) 1812 WP_099357177.1 ABC transporter ATP-binding protein Regulator
  GXM22_RS08000 (GXM22_08005) - 1649885..1650646 (+) 762 WP_005934407.1 AzlC family ABC transporter permease -
  GXM22_RS08005 (GXM22_08010) - 1650643..1650954 (+) 312 WP_005934408.1 AzlD domain-containing protein -
  GXM22_RS15255 - 1651099..1651353 (+) 255 WP_005934409.1 sigma-70 family RNA polymerase sigma factor -
  GXM22_RS15260 - 1651275..1651589 (+) 315 WP_242651664.1 sigma-70 family RNA polymerase sigma factor -
  GXM22_RS08015 (GXM22_08020) - 1651586..1652377 (+) 792 WP_097771915.1 zf-HC2 domain-containing protein -
  GXM22_RS08020 (GXM22_08025) - 1652374..1653207 (+) 834 WP_005934413.1 sugar nucleotide-binding protein -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 66781.19 Da        Isoelectric Point: 6.1956

>NTDB_id=421344 GXM22_RS07995 WP_099357177.1 1647946..1649757(+) (rcrQ) [Faecalibacterium duncaniae strain JCM 31915]
MPRPGKQTTERAKDFKGTLRQLLSALRQYKLSLIVVMVFAILSTIFNIAGPKILAKATTALATGWIAKLRGIGSIDFAYI
GKILLTLLAMYLCSAAFSFIQGWLMTGLSQKVCYDFRRQISEKINRLPLAYFEKRTVGEVLSRITNDVDTLGQSLNQSVT
QLITSITTMIGVLIMMLSISPKMTLIALLILPVSLVLVMLVVRFSQKYFKAQQATLGVVNGQVEEVYSGHNVIKAFNREA
AVLEDFNAANDKLFESAWKSQFLSGLMQPIMNFVGNLGYVAVAIVGSIFAANGIITIGDIQAFIQYVRNFTQPIQQLAQV
SNMLQSMAAAAERVFEFLNEPEEDQLADPARRADPACIDGQVTFDHVRFGYVPEKTIIHDFSCNVQPGQKVAIVGPTGAG
KTTMVKLLMRFYDVDSGSITLNGHDIRDFDRSALREGFGMVLQDTWLFKGTIMENIRYGRLDATDEEVIAAAKAANADHF
IRTLPGGYQMELNEDASNVSQGQKQLLTIARAILADNRILILDEATSSVDTRTEQRIQTAMDNLMRGRTSFVIAHRLSTI
RDADLILVMRDGDIVEQGTHDQLIEAGGFYADLYNSQFEDVVD

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=421344 GXM22_RS07995 WP_099357177.1 1647946..1649757(+) (rcrQ) [Faecalibacterium duncaniae strain JCM 31915]
ATGCCGAGACCCGGAAAACAGACCACCGAGCGCGCCAAGGATTTCAAGGGCACTCTGCGGCAGCTCCTCAGCGCATTGCG
CCAGTATAAGCTTTCCCTCATCGTTGTGATGGTCTTTGCCATCCTTTCCACCATCTTCAATATCGCAGGCCCCAAAATTC
TGGCCAAGGCCACCACGGCCCTTGCCACCGGCTGGATCGCCAAGCTGCGGGGGATCGGCAGCATCGACTTTGCCTACATC
GGCAAGATCCTGCTCACCCTGCTGGCCATGTACCTCTGCTCCGCGGCATTCAGCTTCATTCAGGGCTGGCTGATGACCGG
CCTTTCCCAGAAGGTCTGCTATGATTTCCGCCGCCAGATCAGCGAGAAGATCAACCGCCTGCCGCTGGCCTACTTTGAAA
AGCGGACGGTCGGCGAAGTGCTCTCCCGCATCACCAACGATGTGGACACCCTGGGCCAGAGCCTGAACCAGAGCGTGACC
CAGCTCATCACCAGCATTACCACCATGATCGGCGTGCTGATCATGATGCTGTCCATCAGCCCCAAAATGACCCTGATCGC
ACTGCTCATCCTGCCCGTCTCTCTGGTACTGGTGATGCTGGTGGTCAGGTTCAGCCAGAAATACTTCAAGGCCCAGCAGG
CTACTCTGGGCGTTGTGAACGGTCAGGTGGAGGAAGTCTACTCCGGCCACAACGTCATCAAGGCCTTCAACCGGGAGGCC
GCCGTGCTGGAGGACTTCAACGCCGCCAACGACAAGCTGTTTGAATCTGCCTGGAAGAGCCAGTTCCTCTCCGGCCTGAT
GCAGCCCATTATGAACTTTGTGGGCAACCTGGGCTATGTGGCTGTTGCCATCGTCGGCAGCATCTTTGCCGCCAACGGCA
TCATCACCATCGGCGATATCCAGGCTTTTATCCAGTATGTCCGCAATTTCACCCAGCCCATCCAGCAGCTGGCACAGGTG
TCCAACATGCTGCAGAGCATGGCCGCCGCTGCCGAGCGCGTGTTCGAGTTCCTGAACGAGCCCGAAGAGGATCAGCTGGC
CGACCCTGCCCGCCGGGCAGACCCTGCCTGCATCGATGGTCAGGTCACCTTTGACCATGTCCGGTTCGGTTATGTGCCCG
AAAAGACCATCATCCACGATTTCAGCTGCAATGTGCAGCCCGGCCAGAAGGTCGCCATCGTTGGCCCCACCGGTGCCGGC
AAGACCACCATGGTCAAGCTGCTCATGCGGTTCTACGATGTAGATTCCGGCTCCATCACCCTGAACGGCCACGACATCCG
CGACTTTGACCGCAGTGCCCTGCGCGAGGGCTTTGGCATGGTGCTGCAGGACACCTGGCTGTTCAAGGGCACCATCATGG
AGAATATCCGCTATGGCCGTTTGGATGCCACCGACGAAGAAGTCATTGCCGCCGCCAAGGCCGCCAATGCTGACCACTTC
ATCCGCACCCTGCCCGGCGGCTACCAGATGGAGCTGAACGAGGATGCATCTAACGTCAGTCAGGGCCAGAAGCAGCTGCT
GACGATCGCCCGGGCCATTCTGGCCGACAACCGCATCCTGATCCTGGACGAGGCCACCAGCAGTGTGGACACCCGCACCG
AGCAGCGCATCCAGACTGCTATGGACAACCTGATGCGGGGCCGTACCAGTTTCGTCATCGCCCACCGCCTGTCCACCATC
AGGGATGCAGACCTCATCCTAGTCATGCGGGACGGCGACATTGTGGAGCAGGGCACCCACGACCAGCTCATTGAGGCCGG
CGGTTTCTACGCTGACCTGTACAACAGCCAGTTTGAGGATGTTGTGGATTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(33-313)

ABC transporter (ABC_tran)

(379-527)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.789

97.347

0.504

Multiple sequence alignment