Detailed information NTG0421162

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: GYM54_RS15715
• Genome accession: NZ_CP048411
• Coordinates: 3405455..3406762 (+)
• Length: 435 a.a.
• NCBI ID: WP_131649498.1
• Uniprot ID: -
• Organism: Pseudomonas sp. MTM4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3400455..3411762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GYM54_RS15695 (GYM54_15685)	-	3400688..3401707 (-)	1020	WP_131649494.1	hydrolase	-
GYM54_RS15700 (GYM54_15690)	rsmD	3401745..3402338 (-)	594	WP_131649495.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
GYM54_RS15705 (GYM54_15695)	-	3402338..3403870 (-)	1533	WP_181099503.1	pitrilysin family protein	-
GYM54_RS15710 (GYM54_15700)	-	3403863..3405218 (-)	1356	WP_181099505.1	pitrilysin family protein	-
GYM54_RS15715 (GYM54_15705)	pilA	3405455..3406762 (+)	1308	WP_131649498.1	signal recognition particle-docking protein FtsY	Machinery gene
GYM54_RS15720 (GYM54_15710)	ftsE	3406759..3407430 (+)	672	WP_131649499.1	cell division ATP-binding protein FtsE	-
GYM54_RS15725 (GYM54_15715)	ftsX	3407427..3408437 (+)	1011	WP_181099508.1	permease-like cell division protein FtsX	-
GYM54_RS15730 (GYM54_15720)	rpoH	3408549..3409403 (+)	855	WP_131649501.1	RNA polymerase sigma factor RpoH	-

Sequence

Protein

• Length: 435 a.a.
• Molecular weight: 46274.76 Da
• Isoelectric Point: 4.5369

>NTDB_id=421162 GYM54_RS15715 WP_131649498.1 3405455..3406762(+) (pilA) [Pseudomonas sp. MTM4]
MFGSNDDKKAPAEAGEKKGLFGWLRKKPQTPAAEPPPSEPLEDSQPFADEPDEQAKEQQVEAEQPEPAAEPEIKPEVAPQ
PEPEPVAQLDESMDVPEAPALAEIAVEPVPVPVAEEVPAKLGFFARLKQGLSKTSASIGEGMASLFLGKKAIDDDLLDEL
ETRLLTADVGVEATTAIMQNLSRRVSRKELADSGALYKALQEELAGLLKPVEQPLRIEPGKQPFVILVVGVNGVGKTTTI
GKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQIWGERNNIAVIAQHTGADSASVIFDAVQAAKARGVDVLIADTAGRLHTK
DNLMEELKKVRRVMGKLDETAPHEVLLVLDAGTGQNAINQTKQFNQAVELTGLVLTKLDGTAKGGVIFALAKQFGTPIRY
IGVGEGIDDLRAFEADAFVSALFAEKGASAGNPPS

Nucleotide

• Length: 1308 bp

>NTDB_id=421162 GYM54_RS15715 WP_131649498.1 3405455..3406762(+) (pilA) [Pseudomonas sp. MTM4]
ATGTTTGGTTCCAACGACGATAAGAAGGCGCCGGCCGAGGCCGGCGAGAAGAAAGGCCTGTTCGGCTGGTTGCGCAAGAA
GCCGCAGACCCCAGCAGCCGAACCGCCTCCATCCGAGCCGCTGGAAGACAGCCAGCCGTTCGCCGATGAACCTGATGAGC
AGGCCAAAGAGCAGCAGGTCGAGGCCGAGCAGCCCGAGCCCGCAGCCGAACCGGAAATCAAGCCGGAAGTCGCGCCTCAG
CCCGAACCCGAGCCGGTAGCGCAACTCGATGAATCCATGGATGTGCCGGAAGCCCCGGCGCTCGCTGAAATCGCCGTTGA
GCCGGTACCGGTTCCCGTTGCGGAAGAAGTACCGGCCAAGCTGGGCTTCTTCGCCCGCCTCAAGCAGGGTCTGTCCAAGA
CCAGCGCCAGTATCGGCGAAGGCATGGCCAGCCTGTTCCTGGGCAAGAAGGCCATCGATGACGATCTGCTGGACGAACTG
GAAACCCGCCTGCTGACCGCCGACGTCGGCGTCGAGGCCACCACGGCGATCATGCAGAACCTCTCCCGTCGCGTCTCGCG
CAAGGAGCTGGCCGACAGCGGCGCGCTGTACAAGGCGTTGCAGGAAGAGCTGGCCGGCCTGCTCAAGCCGGTCGAGCAGC
CGCTGCGGATCGAGCCCGGCAAGCAGCCGTTCGTGATTCTGGTGGTCGGCGTCAATGGCGTCGGCAAGACCACCACCATC
GGCAAGCTGGCCAAGAAGCTGCAGCTCGAAGGCAAGAAGGTCATGCTCGCCGCTGGCGACACCTTCCGTGCCGCCGCCGT
GGAGCAGCTGCAGATCTGGGGCGAGCGTAACAACATCGCGGTGATCGCCCAGCACACCGGCGCCGATTCCGCCTCGGTGA
TCTTCGATGCCGTACAGGCCGCGAAGGCCCGTGGCGTCGATGTGCTGATCGCCGACACCGCCGGCCGCCTGCACACCAAG
GACAACCTGATGGAGGAGCTGAAAAAGGTCCGCCGGGTCATGGGCAAGCTGGACGAGACGGCGCCGCACGAGGTGCTGCT
GGTGCTCGACGCCGGCACCGGCCAGAACGCCATCAACCAGACCAAGCAGTTCAATCAGGCGGTGGAACTCACCGGGCTGG
TGCTGACCAAGCTCGACGGCACCGCCAAGGGCGGGGTGATCTTCGCGCTGGCCAAGCAGTTCGGCACGCCGATTCGCTAT
ATCGGGGTGGGTGAGGGCATCGACGACCTGCGCGCCTTCGAGGCGGATGCCTTCGTCAGTGCGCTGTTCGCCGAGAAGGG
AGCGAGCGCAGGTAATCCGCCGTCATGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (223-423)

• SRP54-type protein, helical bundle domain (SRP54_N) (139-204)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	50.118	97.241	0.487