Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilV   Type   Machinery gene
Locus tag   GYM54_RS10175 Genome accession   NZ_CP048411
Coordinates   2228546..2229094 (+) Length   182 a.a.
NCBI ID   WP_181104892.1    Uniprot ID   -
Organism   Pseudomonas sp. MTM4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2223546..2234094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYM54_RS10150 (GYM54_10135) - 2223695..2224522 (+) 828 WP_181104883.1 hypothetical protein -
  GYM54_RS10155 (GYM54_10140) - 2224626..2225669 (+) 1044 WP_181104885.1 tetratricopeptide repeat protein -
  GYM54_RS10160 (GYM54_10145) thiO 2226107..2227201 (-) 1095 WP_181104887.1 glycine oxidase ThiO -
  GYM54_RS10165 (GYM54_10150) - 2227362..2227868 (+) 507 WP_181104889.1 GspH/FimT family pseudopilin -
  GYM54_RS10170 (GYM54_10155) - 2228058..2228537 (+) 480 WP_131651866.1 GspH/FimT family pseudopilin -
  GYM54_RS10175 (GYM54_10160) pilV 2228546..2229094 (+) 549 WP_181104892.1 type IV pilus modification protein PilV Machinery gene
  GYM54_RS10180 (GYM54_10165) - 2229091..2229942 (+) 852 WP_181104894.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GYM54_RS10185 (GYM54_10170) - 2229939..2230616 (+) 678 WP_131651869.1 PilX N-terminal domain-containing pilus assembly protein -

Sequence


Protein


Download         Length: 182 a.a.        Molecular weight: 19720.44 Da        Isoelectric Point: 4.3080

>NTDB_id=421154 GYM54_RS10175 WP_181104892.1 2228546..2229094(+) (pilV) [Pseudomonas sp. MTM4]
MSNNRGFSLIEVMVTLVLTTIGILGMVAMQGRSIQYTQDSLQRNTAIMLASDLAEIIRANPGEVFTRTPPAEPVYSGFKN
TSLFYKDKGSDFTTAPADCVANPTSAIEMRNCWVETVEASLPGAEELLESAFYICRSSTLGTCDGNGSMLEIQLAWTVKA
GACPDDQAPNATTCIYRTRVEL

Nucleotide


Download         Length: 549 bp        

>NTDB_id=421154 GYM54_RS10175 WP_181104892.1 2228546..2229094(+) (pilV) [Pseudomonas sp. MTM4]
ATGAGCAACAACAGAGGCTTTAGCTTGATCGAAGTGATGGTCACCCTGGTACTGACCACCATCGGCATTCTCGGCATGGT
TGCCATGCAGGGCCGCAGCATTCAGTACACCCAGGATTCGTTACAACGAAACACAGCAATCATGCTGGCCAGCGACTTGG
CCGAGATCATTCGCGCCAACCCTGGTGAAGTATTCACGAGGACCCCGCCGGCCGAACCCGTGTATAGCGGCTTCAAGAAC
ACTTCTCTTTTTTACAAAGACAAAGGCAGTGATTTCACGACTGCTCCGGCGGACTGTGTCGCCAACCCTACGAGTGCCAT
CGAGATGCGCAACTGCTGGGTAGAAACCGTCGAAGCCTCTCTGCCTGGCGCTGAGGAACTCCTCGAATCTGCCTTCTATA
TCTGCCGCAGCTCCACACTCGGGACCTGTGACGGCAATGGCTCGATGCTGGAAATCCAGCTGGCCTGGACCGTCAAGGCA
GGTGCCTGCCCCGATGATCAAGCGCCCAACGCCACCACCTGCATCTACAGAACGCGAGTAGAGCTATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

48.619

99.451

0.484


Multiple sequence alignment