Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   H8529_RS08635 Genome accession   NZ_CP061329
Coordinates   1813106..1814533 (-) Length   475 a.a.
NCBI ID   WP_073971680.1    Uniprot ID   -
Organism   Escherichia coli strain EC93     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1808106..1819533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H8529_RS08605 (H8529_01794) yeeZ 1808161..1808985 (+) 825 WP_000754752.1 SDR family oxidoreductase -
  H8529_RS08610 (H8529_01795) yeeY 1809031..1809960 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  H8529_RS08615 yoeI 1810175..1810237 (+) 63 WP_010723108.1 membrane protein YoeI -
  H8529_RS08620 (H8529_01797) plaP 1810227..1811585 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  H8529_RS08625 (H8529_01798) tsuA 1811764..1812822 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  H8529_RS08630 (H8529_01799) tsuB 1812836..1813063 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  H8529_RS08635 (H8529_01800) sbcB 1813106..1814533 (-) 1428 WP_073971680.1 exodeoxyribonuclease I Machinery gene
  H8529_RS08640 (H8529_01801) dacD 1814742..1815908 (+) 1167 WP_001366021.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  H8529_RS08645 (H8529_01802) sbmC 1816027..1816500 (+) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  H8529_RS08650 (H8529_01803) yeeA 1816699..1817757 (+) 1059 WP_001200891.1 FUSC family protein -
  H8529_RS08655 (H8529_01804) tmaR 1817929..1818258 (+) 330 WP_000450409.1 DUF496 family protein -
  H8529_RS08660 (H8529_01805) - 1818359..1818802 (-) 444 WP_001189434.1 EutP/PduV family microcompartment system protein -
  H8529_RS08665 (H8529_01806) pduU 1818807..1819157 (-) 351 WP_000211393.1 propanediol utilization microcompartment protein PduU -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54429.74 Da        Isoelectric Point: 5.6042

>NTDB_id=421141 H8529_RS08635 WP_073971680.1 1813106..1814533(-) (sbcB) [Escherichia coli strain EC93]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEAWAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSGADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=421141 H8529_RS08635 WP_073971680.1 1813106..1814533(-) (sbcB) [Escherichia coli strain EC93]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCATGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
GCGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment