Detailed information NTG0421129

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: H8529_RS05040
• Genome accession: NZ_CP061329
• Coordinates: 1050507..1051499 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain EC93
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1045507..1056499

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H8529_RS05010 (H8529_01043)	ispD	1045568..1046278 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
H8529_RS05015 (H8529_01044)	ispF	1046278..1046757 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
H8529_RS05020 (H8529_01045)	truD	1046754..1047803 (+)	1050	WP_000568924.1	tRNA pseudouridine(13) synthase TruD	-
H8529_RS05025 (H8529_01046)	surE	1047784..1048545 (+)	762	WP_001349984.1	5'/3'-nucleotidase SurE	-
H8529_RS05030 (H8529_01047)	pcm	1048539..1049165 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
H8529_RS05035 (H8529_01048)	nlpD	1049350..1050444 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
H8529_RS05040 (H8529_01049)	rpoS	1050507..1051499 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
H8529_RS05045 (H8529_01050)	-	1051620..1052027 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
H8529_RS05050 (H8529_01051)	-	1052174..1052767 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
H8529_RS05055 (H8529_01052)	-	1052767..1054194 (+)	1428	WP_000863235.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
H8529_RS05060 (H8529_01053)	-	1054205..1054441 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
H8529_RS05065 (H8529_01054)	ygbN	1054480..1055844 (-)	1365	WP_000104439.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=421129 H8529_RS05040 WP_000081550.1 1050507..1051499(+) (rpoS) [Escherichia coli strain EC93]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=421129 H8529_RS05040 WP_000081550.1 1050507..1051499(+) (rpoS) [Escherichia coli strain EC93]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCTTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715