Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GZH78_RS25780 Genome accession   NZ_CP048408
Coordinates   5744115..5745482 (-) Length   455 a.a.
NCBI ID   WP_039771749.1    Uniprot ID   A0A2N8E079
Organism   Pseudomonas fluorescens strain DR397     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5739115..5750482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH78_RS25755 (GZH78_25765) - 5739462..5740157 (+) 696 WP_039771743.1 GntR family transcriptional regulator -
  GZH78_RS25760 (GZH78_25770) yjiA 5740171..5741145 (-) 975 WP_163976520.1 GTPase -
  GZH78_RS25765 (GZH78_25775) - 5741307..5741504 (-) 198 WP_003228401.1 YbdD/YjiX family protein -
  GZH78_RS25770 (GZH78_25780) - 5741520..5743586 (-) 2067 WP_039771745.1 carbon starvation CstA family protein -
  GZH78_RS25775 (GZH78_25785) - 5743746..5744114 (+) 369 WP_064599557.1 PilZ domain-containing protein -
  GZH78_RS25780 (GZH78_25790) radA 5744115..5745482 (-) 1368 WP_039771749.1 DNA repair protein RadA Machinery gene
  GZH78_RS25785 (GZH78_25795) katB 5745626..5747158 (-) 1533 WP_203546296.1 catalase KatB -
  GZH78_RS25790 (GZH78_25800) mscL 5747453..5747866 (+) 414 WP_039771752.1 large-conductance mechanosensitive channel protein MscL -
  GZH78_RS25795 (GZH78_25805) - 5747899..5748675 (-) 777 WP_039771754.1 ferredoxin--NADP reductase -
  GZH78_RS25800 (GZH78_25810) - 5748992..5749714 (+) 723 WP_039771756.1 LuxR C-terminal-related transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48729.20 Da        Isoelectric Point: 6.8987

>NTDB_id=421125 GZH78_RS25780 WP_039771749.1 5744115..5745482(-) (radA) [Pseudomonas fluorescens strain DR397]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSIEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKTMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARQEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDSLFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=421125 GZH78_RS25780 WP_039771749.1 5744115..5745482(-) (radA) [Pseudomonas fluorescens strain DR397]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACTGAGTGCGGCGCAACCTTTCCCAAGTGGGCCGGGCAATGCGGCGAATG
CGGCGCCTGGAACACCCTGACCGAAACCATGGTCGAGAGCGGCGGTGCCGCCGCCCCGAGCGGGCGCACTGGCTGGGCCG
GACAGCAGGCCCAGATCAAGACCCTGGCCGAAGTCAGCATCGAAGAGATTCCACGTTTCTCCACAGCCTCCGGCGAACTG
GACCGAGTGCTCGGCGGTGGTCTGGTGGACGGCTCGGTGGTACTGATCGGTGGCGACCCAGGCATCGGCAAATCGACGAT
TCTGTTGCAGACCCTGTGCAACCTCGCCAAGACCATGCCGGCGTTGTACGTCACTGGCGAAGAGTCCCAGCAACAGGTCG
CCATGCGTGCACGTCGTCTGGGCCTGCCGCAGGATCAATTGCGGGTCATGACCGAAACCTGTATCGAAACCATCATTGCC
ACCGCCCGTCAGGAAAAACCCAAGGTGATGGTGATCGACTCGATCCAGACGATTTTCACCGAACAACTGCAATCGGCACC
GGGCGGGGTGTCCCAGGTACGCGAAAGTGCGGCGTTGCTGGTGCGTTACGCCAAGCAAAGCGGCACGGCGATTTTCCTGG
TCGGCCACGTGACCAAGGAAGGCGCGCTCGCAGGGCCGCGGGTTCTGGAGCACATGGTCGATACCGTGCTGTATTTCGAA
GGCGAGTCCGATGGCCGGTTGCGTTTGCTGCGAGCGGTGAAAAACCGTTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTCACACGTGCTCAGGAAGAAGTCCCGGGCA
GCGTGGTCATGGCAACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGTCATCTGGCC
AACCCGCGTCGGGTCACCCTGGGTCTGGACCAGAATCGTCTGGCGATGCTGTTGGCGGTGCTGCACCGGCATGGCGGCAT
TCCGACCCACGATCAGGATGTGTTTCTCAACGTGGTCGGCGGGGTGAAGGTGCTGGAAACTGCGTCCGACCTGGCGTTGA
TGGCCGCTGTCATGTCGAGTCTGCGCAACCGTCCGCTGCCTCATGATCTGCTGGTGTTCGGAGAAGTCGGTCTGTCCGGC
GAAGTGCGCCCGGTGCCGAGCGGCCAGGAGCGTTTGAAGGAAGCCGCCAAGCACGGCTTCAAGCGCGCAATCGTGCCCAA
GGGCAATGCGCCGAAGGAAGCCCCGCCAGGCTTGCAGATCATTGCGGTGACACGACTGGAGCAGGCGCTGGACTCGTTGT
TCGAGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(81-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8E079

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.015

100

0.492
  radA Streptococcus pneumoniae Rx1

46.304

100

0.468
  radA Streptococcus pneumoniae R6

46.304

100

0.468
  radA Streptococcus pneumoniae TIGR4

46.304

100

0.468
  radA Streptococcus pneumoniae D39

46.304

100

0.468
  radA Streptococcus mitis SK321

46.491

100

0.466
  radA Streptococcus mitis NCTC 12261

46.272

100

0.464

Multiple sequence alignment