Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ECO55CA74_RS02940 Genome accession   NC_017656
Coordinates   597090..597695 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O55:H7 str. RM12579     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 592090..602695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECO55CA74_RS02910 (ECO55CA74_02820) rsmS 592792..592956 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  ECO55CA74_RS02915 (ECO55CA74_02825) priC 592970..593497 (-) 528 WP_000844883.1 primosomal replication protein N'' -
  ECO55CA74_RS02920 (ECO55CA74_02830) ybaN 593567..593944 (+) 378 WP_001188905.1 DUF454 family protein -
  ECO55CA74_RS02925 (ECO55CA74_02835) apt 594097..594648 (+) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  ECO55CA74_RS02930 (ECO55CA74_02840) dnaX 594777..596708 (+) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  ECO55CA74_RS02935 (ECO55CA74_02845) ybaB 596761..597090 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ECO55CA74_RS02940 (ECO55CA74_02850) recR 597090..597695 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ECO55CA74_RS02945 (ECO55CA74_02855) htpG 597805..599679 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  ECO55CA74_RS02950 (ECO55CA74_02860) adk 599860..600504 (+) 645 WP_001417730.1 adenylate kinase -
  ECO55CA74_RS02955 (ECO55CA74_02865) hemH 600636..601598 (+) 963 WP_001250105.1 ferrochelatase -
  ECO55CA74_RS02960 (ECO55CA74_02870) aes 601595..602554 (-) 960 WP_000801801.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=42110 ECO55CA74_RS02940 WP_001195025.1 597090..597695(+) (recR) [Escherichia coli O55:H7 str. RM12579]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=42110 ECO55CA74_RS02940 WP_001195025.1 597090..597695(+) (recR) [Escherichia coli O55:H7 str. RM12579]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443