Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   D39N_RS04505 Genome accession   NZ_CP061208
Coordinates   906240..906704 (+) Length   154 a.a.
NCBI ID   WP_001135782.1    Uniprot ID   P59659
Organism   Streptococcus pneumoniae strain D39_P0     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 901240..911704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D39N_RS10910 - 903155..903229 (+) 75 Protein_901 dihydroxyacetone kinase subunit L -
  D39N_RS04485 dhaM 903229..903609 (+) 381 Protein_902 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  D39N_RS04490 (D39N_00907) - 904067..904780 (+) 714 WP_000499433.1 YjjG family noncanonical pyrimidine nucleotidase -
  D39N_RS04495 (D39N_00908) - 904794..905441 (+) 648 WP_001824648.1 hypothetical protein -
  D39N_RS04500 (D39N_00909) - 905577..906230 (+) 654 WP_000401328.1 uracil-DNA glycosylase -
  D39N_RS04505 (D39N_00910) mutX 906240..906704 (+) 465 WP_001135782.1 8-oxo-dGTP diphosphatase Machinery gene
  D39N_RS04510 (D39N_00911) - 906717..907985 (+) 1269 WP_000924481.1 dihydroorotase -
  D39N_RS04515 (D39N_00912) - 907999..908259 (+) 261 WP_001105925.1 hypothetical protein -
  D39N_RS04520 (D39N_00913) pdrM 908270..909631 (+) 1362 WP_000278532.1 sodium-coupled multidrug efflux MATE transporter PdrM -
  D39N_RS04525 (D39N_00914) - 909785..910753 (+) 969 WP_000105362.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17870.30 Da        Isoelectric Point: 4.2287

>NTDB_id=420945 D39N_RS04505 WP_001135782.1 906240..906704(+) (mutX) [Streptococcus pneumoniae strain D39_P0]
MPQLATICYIDNGKELLMLHRNKKPNDVHEGKWIGVGGKLERGETPQECAVREILEETGLKAKPVLKGVITFPEFTPDLD
WYTYVFKVTEFEGDLIDCNEGMLEWVPYDEVLSKPTWEGDHTFVEWLLEDKPFFSAKFVYDGDKLLDTQVDFYE

Nucleotide


Download         Length: 465 bp        

>NTDB_id=420945 D39N_RS04505 WP_001135782.1 906240..906704(+) (mutX) [Streptococcus pneumoniae strain D39_P0]
ATGCCTCAGTTAGCGACGATTTGTTACATTGATAATGGGAAAGAACTGCTCATGCTCCATCGTAATAAGAAACCCAATGA
TGTCCATGAAGGGAAATGGATTGGTGTGGGTGGTAAGCTAGAGAGAGGAGAGACGCCCCAGGAATGCGCGGTACGTGAAA
TCCTTGAAGAAACAGGGCTCAAAGCCAAGCCAGTTCTAAAAGGTGTCATCACTTTTCCTGAATTTACACCAGATTTAGAC
TGGTACACCTATGTTTTTAAGGTGACGGAGTTTGAGGGCGACTTGATTGACTGCAATGAGGGGATGCTAGAATGGGTTCC
CTATGATGAGGTTTTGAGCAAGCCGACCTGGGAAGGTGACCACACCTTTGTTGAGTGGCTTTTAGAGGATAAACCCTTCT
TTTCAGCCAAGTTTGTTTATGATGGGGATAAATTGTTGGATACCCAAGTTGATTTCTATGAATAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(2-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P59659

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

100

100

1