Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   D39N_RS02560 Genome accession   NZ_CP061208
Coordinates   519363..519629 (+) Length   88 a.a.
NCBI ID   WP_001819358.1    Uniprot ID   Q8DQT3
Organism   Streptococcus pneumoniae strain D39_P0     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514363..524629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D39N_RS02540 (D39N_00513) - 514577..515086 (+) 510 WP_000619941.1 N-acetyltransferase -
  D39N_RS02545 (D39N_00514) pheT 515163..517565 (+) 2403 WP_000909142.1 phenylalanine--tRNA ligase subunit beta -
  D39N_RS02550 (D39N_00515) - 517633..518634 (-) 1002 WP_000597995.1 endonuclease/exonuclease/phosphatase family protein -
  D39N_RS02555 (D39N_00516) - 518790..519237 (+) 448 Protein_513 IS30 family transposase -
  D39N_RS02560 (D39N_00517) HI0659 519363..519629 (+) 267 WP_001819358.1 helix-turn-helix transcriptional regulator Machinery gene
  D39N_RS02565 (D39N_00518) metE 519890..522139 (+) 2250 WP_000108190.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  D39N_RS02570 (D39N_00519) metF 522203..523069 (+) 867 WP_000089991.1 methylenetetrahydrofolate reductase [NAD(P)H] -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9667.20 Da        Isoelectric Point: 4.6537

>NTDB_id=420929 D39N_RS02560 WP_001819358.1 519363..519629(+) (HI0659) [Streptococcus pneumoniae strain D39_P0]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAV
VRLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=420929 D39N_RS02560 WP_001819358.1 519363..519629(+) (HI0659) [Streptococcus pneumoniae strain D39_P0]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAGTC
GTCCGACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DQT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

58.442

87.5

0.511

Multiple sequence alignment