Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LCGT_RS01200 Genome accession   NC_015930
Coordinates   237867..239018 (+) Length   383 a.a.
NCBI ID   WP_003133837.1    Uniprot ID   F9VBJ2
Organism   Lactococcus garvieae ATCC 49156     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 232867..244018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCGT_RS10420 - 235258..235371 (+) 114 Protein_227 Cna B-type domain-containing protein -
  LCGT_RS10425 (LCGT_0230) - 235441..235605 (+) 165 WP_014024222.1 hypothetical protein -
  LCGT_RS01190 (LCGT_0231) era 235836..236747 (+) 912 WP_003133835.1 GTPase Era -
  LCGT_RS01195 (LCGT_0232) mutM 236942..237763 (+) 822 WP_014024223.1 DNA-formamidopyrimidine glycosylase -
  LCGT_RS01200 (LCGT_0233) recA 237867..239018 (+) 1152 WP_003133837.1 recombinase RecA Machinery gene
  LCGT_RS01205 (LCGT_0234) - 239053..240417 (-) 1365 WP_014024224.1 amino acid permease -
  LCGT_RS01210 (LCGT_0235) - 240624..240998 (+) 375 WP_003133841.1 YlbF family regulator -
  LCGT_RS01215 (LCGT_0236) - 240982..241338 (+) 357 WP_014024225.1 YlbG family protein -
  LCGT_RS01220 (LCGT_0237) - 241397..241915 (-) 519 WP_014024226.1 hypothetical protein -
  LCGT_RS01225 (LCGT_0238) - 242044..242640 (-) 597 WP_003133845.1 CYTH domain-containing protein -
  LCGT_RS01230 (LCGT_0239) - 242958..243638 (+) 681 WP_016171021.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40880.80 Da        Isoelectric Point: 5.0719

>NTDB_id=42089 LCGT_RS01200 WP_003133837.1 237867..239018(+) (recA) [Lactococcus garvieae ATCC 49156]
MATKKKKKLEDITKKYGAEREKALKDALDLIEKDFGKGSLMRLGEAASQKVQVTSSGSLALDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQVQAEGGIAAFIDAEHALDPVYAAAIGVDIDQLLLSQPDYGEQGLQIAEKLIESGAVDLVVVDSV
AALTPRAEIDGEIGDSTVGLQARMMSQAMRKLAAGINKTKTTAIFINQLREKVGVMFGSPETTPGGRALKFYASVRLDVR
GSTKIEEGSGDNKTAIGKLTKIKVVKNKVAPPFKVALVDIMFGEGISKTGELLTIAVEEGIVKKAGAWFSYNDEKIGQGA
EKAKAFLKDNPEIFNEIDRKVRQNHGLIEGDEADEKEDVKPAKADEKAKVEAAGVEEIELELE

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=42089 LCGT_RS01200 WP_003133837.1 237867..239018(+) (recA) [Lactococcus garvieae ATCC 49156]
ATGGCTACAAAGAAAAAGAAAAAATTAGAAGATATCACAAAAAAATATGGTGCAGAACGTGAAAAAGCCTTAAAAGATGC
GCTTGACCTTATCGAAAAGGATTTTGGTAAAGGTTCTTTGATGCGTTTGGGTGAAGCTGCGAGCCAAAAAGTTCAAGTGA
CAAGTTCAGGAAGCTTGGCTTTGGATATTGCACTTGGTGCCGGTGGTTATCCGAAAGGTCGTATCATCGAAATCTACGGA
CCAGAAAGTTCTGGTAAGACTACGGTTGCGTTGCATGCGGTTGCTCAAGTGCAAGCCGAAGGGGGGATTGCTGCCTTTAT
CGATGCGGAGCACGCTTTGGATCCTGTCTATGCTGCAGCGATCGGTGTCGACATTGACCAACTTCTTTTGTCACAACCTG
ACTATGGTGAACAAGGCTTACAAATTGCTGAAAAATTGATTGAATCTGGTGCAGTGGACCTTGTTGTTGTCGACTCTGTT
GCTGCCTTGACACCACGTGCCGAAATTGACGGTGAAATCGGAGATTCGACAGTTGGTTTGCAAGCACGTATGATGAGTCA
AGCCATGCGTAAGCTTGCTGCAGGCATCAACAAAACAAAAACAACAGCAATCTTTATCAACCAATTGCGTGAAAAAGTTG
GTGTTATGTTTGGGAGTCCTGAAACAACACCTGGTGGTCGTGCCTTGAAATTCTATGCTTCTGTACGTTTAGATGTTCGT
GGCAGCACAAAAATCGAAGAAGGTTCCGGTGACAACAAAACAGCCATTGGTAAATTAACGAAGATTAAAGTCGTTAAAAA
CAAAGTTGCGCCACCGTTTAAAGTTGCTTTAGTAGACATCATGTTTGGCGAAGGTATTTCTAAAACAGGTGAACTCTTAA
CCATTGCCGTTGAAGAAGGCATTGTGAAGAAAGCAGGGGCTTGGTTCTCTTATAATGACGAAAAAATCGGTCAAGGTGCG
GAGAAAGCGAAAGCCTTCCTTAAAGATAATCCTGAAATTTTCAATGAAATTGACCGTAAAGTACGTCAAAATCACGGTTT
GATTGAAGGTGATGAAGCGGATGAAAAAGAAGATGTTAAACCAGCAAAAGCAGATGAAAAAGCAAAAGTTGAAGCTGCTG
GCGTAGAAGAAATCGAGCTTGAATTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9VBJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Lactococcus lactis subsp. cremoris KW2

86.364

91.906

0.794
  recA Streptococcus mitis SK321

78.158

99.217

0.775
  recA Streptococcus mitis NCTC 12261

78.158

99.217

0.775
  recA Streptococcus pneumoniae Rx1

77.895

99.217

0.773
  recA Streptococcus pneumoniae D39

77.895

99.217

0.773
  recA Streptococcus pneumoniae R6

77.895

99.217

0.773
  recA Streptococcus pneumoniae TIGR4

77.895

99.217

0.773
  recA Streptococcus mutans UA159

77.322

95.561

0.739
  recA Streptococcus pyogenes NZ131

80.523

89.817

0.723
  recA Latilactobacillus sakei subsp. sakei 23K

63.352

91.906

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

65.455

86.162

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.347

87.99

0.522
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.303

86.162

0.52
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.726

89.556

0.517
  recA Glaesserella parasuis strain SC1401

57.31

89.295

0.512
  recA Acinetobacter baumannii D1279779

60.185

84.595

0.509
  recA Vibrio cholerae strain A1552

60.185

84.595

0.509
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.185

84.595

0.509
  recA Acinetobacter baylyi ADP1

60.185

84.595

0.509
  recA Helicobacter pylori 26695

58.359

85.901

0.501
  recA Helicobacter pylori strain NCTC11637

58.359

85.901

0.501
  recA Neisseria gonorrhoeae MS11

59.119

83.029

0.491
  recA Neisseria gonorrhoeae MS11

59.119

83.029

0.491
  recA Neisseria gonorrhoeae strain FA1090

59.119

83.029

0.491
  recA Ralstonia pseudosolanacearum GMI1000

58.991

82.768

0.488
  recA Pseudomonas stutzeri DSM 10701

56.173

84.595

0.475

Multiple sequence alignment