Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GZS12_RS14885 Genome accession   NZ_CP048337
Coordinates   3113747..3114376 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 142     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3108747..3119376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZS12_RS14870 (GZS12_14870) helD 3108989..3111043 (-) 2055 WP_022645482.1 DNA helicase IV -
  GZS12_RS14875 (GZS12_14875) yccF 3111166..3111612 (+) 447 WP_001261235.1 YccF domain-containing protein -
  GZS12_RS14880 (GZS12_14880) yccS 3111622..3113784 (+) 2163 WP_000875041.1 YccS family putative transporter -
  GZS12_RS14885 (GZS12_14885) sxy/tfoX 3113747..3114376 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  GZS12_RS14890 (GZS12_14890) sulA 3114595..3115104 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  GZS12_RS14895 (GZS12_14895) ompA 3115461..3116501 (+) 1041 WP_022645481.1 porin OmpA -
  GZS12_RS14900 (GZS12_14900) matP 3116578..3117030 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  GZS12_RS14905 (GZS12_14905) ycbZ 3117216..3118976 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=420737 GZS12_RS14885 WP_000839153.1 3113747..3114376(-) (sxy/tfoX) [Escherichia coli strain 142]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=420737 GZS12_RS14885 WP_000839153.1 3113747..3114376(-) (sxy/tfoX) [Escherichia coli strain 142]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment