Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   IAU66_RS19260 Genome accession   NZ_CP061168
Coordinates   3898888..3899577 (-) Length   229 a.a.
NCBI ID   WP_004393241.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain T-5     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3893888..3904577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU66_RS19240 - 3894792..3895139 (-) 348 WP_004393256.1 YxeA family protein -
  IAU66_RS19245 yxdM 3895153..3897021 (-) 1869 WP_024085998.1 ABC transporter permease YxdM -
  IAU66_RS19250 yxdL 3896996..3897769 (-) 774 WP_004393250.1 ABC transporter ATP-binding protein YxdL -
  IAU66_RS19255 yxdK 3897914..3898891 (-) 978 WP_014306127.1 two-component system sensor histidine kinase YxdK -
  IAU66_RS19260 braR 3898888..3899577 (-) 690 WP_004393241.1 two-component system response regulator YxdJ Regulator
  IAU66_RS19265 fba 3899685..3900557 (-) 873 WP_024085999.1 class II fructose-1,6-bisphosphate aldolase -
  IAU66_RS19270 iolI 3900560..3901402 (-) 843 WP_015387483.1 2-keto-myo-inositol isomerase -
  IAU66_RS19275 - 3901490..3902359 (-) 870 WP_015387482.1 sugar phosphate isomerase/epimerase family protein -
  IAU66_RS19280 - 3902378..3903412 (-) 1035 WP_024086000.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26545.26 Da        Isoelectric Point: 4.8564

>NTDB_id=420727 IAU66_RS19260 WP_004393241.1 3898888..3899577(-) (braR) [Bacillus amyloliquefaciens strain T-5]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=420727 IAU66_RS19260 WP_004393241.1 3898888..3899577(-) (braR) [Bacillus amyloliquefaciens strain T-5]
TTGAATAAAATCATGATTGTGGAAGATAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCCGCGGATTTCACGGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ACCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCATTCTACAAGCCCGATCATTTTCATCTCAGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGAGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
CATTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAACGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393

Multiple sequence alignment