Detailed information NTG0420723

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: IAU66_RS17900
• Genome accession: NZ_CP061168
• Coordinates: 3639726..3640856 (-)
• Length: 376 a.a.
• NCBI ID: WP_003151195.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain T-5
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3634726..3645856

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IAU66_RS20105	-	3635220..3635450 (-)	231	WP_223203781.1	hypothetical protein	-
IAU66_RS17870	-	3635570..3635974 (-)	405	WP_003151203.1	Rrf2 family transcriptional regulator	-
IAU66_RS17875	ureC	3636115..3637824 (-)	1710	WP_024085908.1	urease subunit alpha	-
IAU66_RS17880	ureB	3637821..3638195 (-)	375	WP_003151199.1	urease subunit beta	-
IAU66_RS17885	ureA	3638192..3638509 (-)	318	WP_003151198.1	urease subunit gamma	-
IAU66_RS17890	-	3638862..3639050 (-)	189	WP_003151197.1	CsbD family protein	-
IAU66_RS17895	-	3639124..3639603 (-)	480	WP_003151196.1	hypothetical protein	-
IAU66_RS17900	rapC	3639726..3640856 (-)	1131	WP_003151195.1	tetratricopeptide repeat protein	Regulator
IAU66_RS17905	moaA	3641047..3642072 (-)	1026	WP_014306000.1	GTP 3',8-cyclase MoaA	-
IAU66_RS17910	fdhD	3642090..3642878 (-)	789	WP_014306001.1	formate dehydrogenase accessory sulfurtransferase FdhD	-
IAU66_RS17915	-	3642973..3643137 (-)	165	WP_003151191.1	hypothetical protein	-
IAU66_RS17920	-	3643224..3643904 (-)	681	WP_015387578.1	VWA domain-containing protein	-
IAU66_RS17925	-	3644214..3644900 (-)	687	WP_024085909.1	VWA domain-containing protein	-

Sequence

Protein

• Length: 376 a.a.
• Molecular weight: 44932.05 Da
• Isoelectric Point: 5.3221

>NTDB_id=420723 IAU66_RS17900 WP_003151195.1 3639726..3640856(-) (rapC) [Bacillus amyloliquefaciens strain T-5]
MTAYEIPSSQVGVKINKWYKHILAFQAADAIKLKEEIDEDIQRMEEDQLLLLYYQLISYRHHIMLDYVKPECTEQSQIQY
SELQKTIESTDSISGLSEYYFHLFRGMYEFDHNNYVAAISFYRKAEKLLSFVEDDIERAEFHFKMSEVFYVMKQTHFSMN
HGIQALDTYMKHDFYRVRRIQCHFVISGNYIDCKNYDKALEHLDEALRLSLLEGQPRLIGSSLYNLGNCYAEKRDLDEAA
RYFRKAVPVFEEHQLEQLPKALFSLTHTLFRLHDDQAALTYYERGIMIAKERGDRFSLEKYKFLQALYLESLNMDLIHEV
FDYMNEKSLYVYIEDFALEAAVYTSAHEQYKEAAYFYEKAIRMRENIQKEQCLYDI

Nucleotide

• Length: 1131 bp

>NTDB_id=420723 IAU66_RS17900 WP_003151195.1 3639726..3640856(-) (rapC) [Bacillus amyloliquefaciens strain T-5]
ATGACCGCATACGAGATTCCGTCATCTCAAGTTGGAGTCAAGATCAACAAATGGTACAAGCACATTTTAGCGTTTCAAGC
GGCTGATGCCATAAAGCTGAAAGAGGAAATTGATGAGGATATACAACGTATGGAGGAAGACCAGCTGCTGCTGTTATATT
ATCAGCTGATCAGCTACCGCCATCATATTATGCTTGATTACGTCAAGCCGGAATGCACCGAACAATCACAGATTCAGTAC
AGCGAGCTGCAAAAGACGATCGAAAGCACGGACAGCATATCGGGACTGTCTGAGTATTATTTCCATTTGTTCAGAGGGAT
GTATGAATTCGATCACAATAACTATGTTGCGGCTATTTCTTTTTACCGGAAAGCGGAAAAACTCCTTTCATTTGTCGAGG
ATGATATAGAGAGGGCGGAATTCCATTTCAAGATGTCTGAAGTGTTTTACGTCATGAAGCAGACTCATTTTTCCATGAAT
CACGGGATTCAGGCGCTGGATACGTATATGAAACACGATTTTTACAGAGTGCGGAGAATTCAATGCCATTTCGTCATTTC
AGGAAACTACATCGACTGCAAAAACTACGACAAAGCGCTTGAGCATTTAGACGAAGCCCTCCGCCTTTCTTTGCTTGAAG
GACAGCCCCGCCTGATCGGGTCTTCGCTTTACAATCTGGGGAATTGTTATGCTGAAAAGCGGGATCTGGATGAAGCGGCC
CGGTACTTTAGAAAAGCGGTTCCCGTTTTTGAAGAGCATCAGCTTGAACAGCTTCCGAAGGCGCTGTTCAGCTTAACGCA
CACCCTTTTCAGGCTGCATGATGACCAAGCGGCCCTCACCTATTATGAAAGAGGGATCATGATCGCGAAAGAACGCGGCG
ACCGATTCAGTTTAGAGAAGTATAAGTTTTTACAAGCGCTTTATTTGGAGTCACTCAATATGGATTTAATCCATGAAGTG
TTTGACTATATGAATGAAAAATCGCTGTATGTGTATATTGAAGATTTCGCCTTGGAGGCCGCCGTTTACACAAGCGCACA
TGAGCAATATAAAGAAGCGGCGTATTTTTATGAAAAAGCGATTCGCATGAGAGAAAACATTCAAAAAGAACAGTGTTTAT
ACGATATATAA

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Anaphase-promoting complex subunit 5 (ANAPC5) (314-373)

• Tetratricopeptide repeat (TPR_12) (192-251)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	41.842	100	0.423
rapF	Bacillus subtilis subsp. subtilis str. 168	40	99.734	0.399