Detailed information    

insolico Bioinformatically predicted

Overview

Name   helD   Type   Machinery gene
Locus tag   IAU66_RS16260 Genome accession   NZ_CP061168
Coordinates   3317725..3320040 (-) Length   771 a.a.
NCBI ID   WP_072588400.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain T-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3312725..3325040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU66_RS16250 cysI 3313999..3315714 (-) 1716 WP_003151735.1 assimilatory sulfite reductase (NADPH) hemoprotein subunit -
  IAU66_RS16255 - 3315742..3317550 (-) 1809 WP_015387718.1 assimilatory sulfite reductase (NADPH) flavoprotein subunit -
  IAU66_RS16260 helD 3317725..3320040 (-) 2316 WP_072588400.1 RNA polymerase recycling motor HelD Machinery gene
  IAU66_RS16265 - 3320232..3320840 (-) 609 WP_046341423.1 trimeric intracellular cation channel family protein -
  IAU66_RS16270 - 3321063..3321863 (+) 801 WP_083058728.1 zinc-dependent metalloprotease -
  IAU66_RS16275 - 3321897..3322316 (-) 420 WP_007410015.1 disulfide oxidoreductase -
  IAU66_RS16280 - 3322306..3322977 (-) 672 WP_083058726.1 DsbA family protein -

Sequence

Protein


Download         Length: 771 a.a.        Molecular weight: 87946.82 Da        Isoelectric Point: 6.0684

>NTDB_id=420711 IAU66_RS16260 WP_072588400.1 3317725..3320040(-) (helD) [Bacillus amyloliquefaciens strain T-5]
MNQQDKEWKEEQSRIDEVLKELRKKERSLETSSGGLKQDIVGLRKTFWDDVTVNMDDAHEAAETFSSIKQQAEMLSERER
THRLQYRQLQKIQKLKTSPYFGRVDFTEKGESSSERIYIGLTSLMDENNEQFLIYDWRAPISSLYYQYSPGKARYEVPEE
TIEGDITLKRQFIIKNGTLKAMFNTDMTIGDEMLQEVLSGHSGQHMKNIVSTIQKEQNEIIRDEKSKYLIVQGAAGSGKT
SAALQRAAYLLYRGRGVLDARQIVLFSPNILFNSYVSAVLPELGEENMEQATFQEYIIRRLGRKFDCESPYEQLEYCLTE
QNQDALSVRLAAIAYKASPAFQALIDRYAGSLSVSGLKCKQISFRGDILISKERIEAYFYSLDQQLPIPNRAELTAEWLL
AEISALEKKERKKEWVLQESELLDKEDYAEVYQTLKKQAADDEPAFDDHQREQRLLGAIIVGKAFKPIKQAVRRLGFLDI
KRMYLRLFSDWGADEKPDHWESIGALTGNAFAERSLPYEDAAPYLYLQDLLEGKRKNTQMKHVFIDEAQDYSPFQLTYIQ
TIFPAAKMTVLGDVSQSIYAHTITGPSSLAGCFRNGAEKYVSLKRTYRSTRQIVEFTKALLADGDDIEPFNRNGEKPRVL
RTDTENARREQLADTIRELRQKGWETVAVICKTAAEAKKVFQAVSAESGVRLINKENQPFQKGVCVIPVYLAKGIEFDAV
IAADASAAQYNSEHDRKLLYTACTRAMHHLTVLSPGEPSPFIKEVPAGLFV

Nucleotide


Download         Length: 2316 bp        

>NTDB_id=420711 IAU66_RS16260 WP_072588400.1 3317725..3320040(-) (helD) [Bacillus amyloliquefaciens strain T-5]
ATGAATCAGCAGGATAAGGAATGGAAGGAAGAGCAGTCAAGAATAGATGAAGTGCTGAAGGAGCTCCGCAAAAAAGAGCG
GTCTCTGGAAACATCATCGGGCGGATTGAAGCAGGATATTGTCGGCCTGAGAAAAACGTTTTGGGATGATGTCACCGTGA
ATATGGATGACGCCCATGAAGCGGCTGAGACATTTTCAAGCATTAAACAGCAGGCGGAAATGCTTTCAGAACGTGAACGG
ACGCATCGGCTTCAATACCGGCAGCTTCAAAAAATCCAAAAGCTGAAAACCTCTCCTTACTTCGGCCGTGTCGATTTTAC
GGAAAAAGGGGAGTCCTCTTCCGAGCGGATTTATATCGGGCTGACTTCTTTAATGGATGAAAACAACGAGCAATTTCTCA
TTTATGATTGGCGCGCGCCCATCTCATCTCTTTACTATCAATATTCCCCGGGAAAAGCCCGCTATGAAGTTCCGGAAGAA
ACGATAGAGGGAGACATCACACTGAAGCGGCAGTTCATCATTAAAAACGGGACGCTTAAAGCGATGTTTAACACGGATAT
GACGATTGGTGACGAAATGCTGCAAGAGGTGCTGAGTGGCCATTCCGGACAGCATATGAAAAACATCGTGTCAACCATCC
AAAAAGAACAGAACGAAATCATCCGGGATGAAAAAAGCAAATATCTCATCGTTCAGGGAGCCGCCGGAAGCGGGAAAACA
TCCGCGGCGCTTCAGCGGGCCGCTTACTTGCTGTACCGCGGGCGCGGGGTGCTTGATGCCCGTCAGATTGTATTGTTTTC
CCCGAACATTTTGTTCAACAGTTATGTGTCCGCCGTATTGCCGGAATTGGGAGAAGAGAATATGGAGCAGGCCACCTTTC
AGGAATATATCATCCGCCGTCTCGGACGAAAGTTTGATTGTGAAAGCCCGTACGAGCAGCTTGAATATTGCCTGACTGAA
CAAAATCAGGACGCACTTTCCGTAAGGCTCGCAGCCATTGCTTACAAAGCGTCACCAGCTTTCCAGGCCCTGATTGACCG
CTATGCCGGGTCGCTTTCGGTCTCCGGCCTGAAATGTAAACAGATCAGCTTCCGGGGAGACATCCTGATTTCAAAAGAGC
GGATTGAAGCCTATTTTTATTCGCTTGATCAGCAGCTGCCGATTCCGAACAGAGCGGAGCTGACGGCGGAATGGCTTCTC
GCGGAAATCAGCGCTCTCGAAAAAAAGGAGCGTAAGAAGGAATGGGTCTTGCAGGAGAGCGAGCTGCTTGATAAGGAAGA
CTATGCTGAGGTTTATCAAACACTCAAGAAGCAGGCGGCAGATGATGAACCTGCATTTGACGACCATCAGCGCGAACAGC
GGCTGCTTGGCGCCATTATTGTCGGCAAAGCCTTTAAACCGATTAAGCAGGCCGTCAGACGGCTCGGCTTTCTCGATATA
AAACGGATGTATCTCCGGCTGTTTTCAGACTGGGGAGCTGATGAAAAGCCCGATCATTGGGAGAGCATCGGCGCTTTGAC
CGGAAACGCATTTGCAGAACGGTCGCTTCCGTATGAAGATGCCGCTCCGTATCTGTATTTGCAGGATCTGTTAGAAGGAA
AAAGAAAAAACACACAAATGAAGCACGTCTTCATTGATGAAGCGCAGGATTATTCCCCATTTCAGCTCACGTATATTCAA
ACCATCTTCCCGGCGGCAAAGATGACGGTGCTCGGTGATGTCAGCCAGTCGATTTATGCCCATACCATTACGGGCCCTTC
TTCCCTCGCCGGCTGCTTTCGCAATGGTGCAGAAAAGTATGTCAGCCTGAAGCGGACTTACAGATCGACGCGGCAGATTG
TTGAATTTACGAAAGCGCTGCTGGCTGACGGCGATGACATTGAGCCTTTTAACCGGAACGGGGAAAAACCGCGTGTTTTG
CGGACGGATACAGAAAATGCGCGGCGGGAACAATTGGCGGATACAATCCGGGAGCTCAGACAAAAAGGCTGGGAGACGGT
CGCCGTCATCTGCAAAACGGCCGCGGAAGCCAAAAAAGTGTTTCAGGCGGTCAGCGCCGAGAGCGGTGTCCGTTTAATCA
ATAAAGAAAACCAGCCTTTTCAAAAAGGGGTATGCGTCATTCCCGTTTATTTGGCAAAAGGCATTGAGTTTGACGCCGTC
ATCGCCGCTGACGCCTCTGCTGCCCAGTACAATAGCGAACATGACCGTAAGCTGTTATATACGGCCTGTACGCGGGCGAT
GCATCATTTGACCGTATTGTCTCCGGGAGAACCCTCTCCTTTTATAAAAGAAGTGCCCGCCGGCTTATTCGTATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(704-752)

UvrD-like helicase C-terminal domain (UvrD_C)

(601-685)

AAA domain (AAA_19)

(217-580)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  helD Bacillus subtilis subsp. subtilis str. 168

67.922

99.87

0.678