Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   IAU66_RS08860 Genome accession   NZ_CP061168
Coordinates   1776982..1777413 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain T-5     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1771982..1782413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU66_RS08840 spoVS 1772551..1772811 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  IAU66_RS08845 tdh 1773070..1774116 (+) 1047 WP_015388219.1 L-threonine 3-dehydrogenase -
  IAU66_RS08850 - 1774129..1775307 (+) 1179 WP_088037143.1 glycine C-acetyltransferase -
  IAU66_RS08855 miaB 1775450..1776979 (+) 1530 WP_024085311.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  IAU66_RS08860 ymcA 1776982..1777413 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  IAU66_RS08865 cotE 1777667..1778212 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  IAU66_RS08870 hexA 1778331..1780916 (+) 2586 WP_024085312.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=420658 IAU66_RS08860 WP_003154113.1 1776982..1777413(+) (ymcA) [Bacillus amyloliquefaciens strain T-5]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=420658 IAU66_RS08860 WP_003154113.1 1776982..1777413(+) (ymcA) [Bacillus amyloliquefaciens strain T-5]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAGCAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATTATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916