Detailed information
Bioinformatically predicted
Overview
| Name | scnR | Type | Regulator |
| Locus tag | IAU66_RS06485 | Genome accession | NZ_CP061168 |
| Coordinates | 1266605..1267276 (+) | Length | 223 a.a. |
| NCBI ID | WP_003154900.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain T-5 | ||
| Function | regulate comX expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1261605..1272276
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IAU66_RS06470 | - | 1262414..1263412 (+) | 999 | WP_003154904.1 | LacI family DNA-binding transcriptional regulator | - |
| IAU66_RS06475 | - | 1263486..1264931 (+) | 1446 | WP_083058981.1 | tagaturonate reductase | - |
| IAU66_RS06480 | - | 1264928..1266421 (+) | 1494 | WP_003154902.1 | UxaA family hydrolase | - |
| IAU66_RS06485 | scnR | 1266605..1267276 (+) | 672 | WP_003154900.1 | response regulator transcription factor | Regulator |
| IAU66_RS06490 | - | 1267273..1268631 (+) | 1359 | WP_003154898.1 | HAMP domain-containing sensor histidine kinase | - |
| IAU66_RS06495 | - | 1268751..1269686 (+) | 936 | WP_003154897.1 | ABC transporter ATP-binding protein | - |
| IAU66_RS06500 | - | 1269667..1270398 (+) | 732 | WP_003154895.1 | ABC transporter permease | - |
| IAU66_RS06505 | - | 1270416..1270607 (+) | 192 | WP_003154894.1 | hypothetical protein | - |
| IAU66_RS06510 | - | 1270673..1271923 (+) | 1251 | WP_060386888.1 | sensor histidine kinase | - |
Sequence
Protein
Download Length: 223 a.a. Molecular weight: 26422.68 Da Isoelectric Point: 6.5038
>NTDB_id=420635 IAU66_RS06485 WP_003154900.1 1266605..1267276(+) (scnR) [Bacillus amyloliquefaciens strain T-5]
MNNILYIEDDQEIGQFVKDDLEDRGYMIIWLTSSYNYETYIEKADLIVLDIMMPGLDGFTIGQRMKKTHPQIPLLLLTAR
TGLEDKLKGLGFADDYVTKPFHPDELAARIEVLLRRFDKTAIHELKLKHLSVHLKEKRILNHQSHEEIFLTDKQLRIFLL
LLRHPNQILTKEQIYENIWEQPYIEGDKTLMVHIRHLRQKIEINPNEPEILETIRGIGYRIKQ
MNNILYIEDDQEIGQFVKDDLEDRGYMIIWLTSSYNYETYIEKADLIVLDIMMPGLDGFTIGQRMKKTHPQIPLLLLTAR
TGLEDKLKGLGFADDYVTKPFHPDELAARIEVLLRRFDKTAIHELKLKHLSVHLKEKRILNHQSHEEIFLTDKQLRIFLL
LLRHPNQILTKEQIYENIWEQPYIEGDKTLMVHIRHLRQKIEINPNEPEILETIRGIGYRIKQ
Nucleotide
Download Length: 672 bp
>NTDB_id=420635 IAU66_RS06485 WP_003154900.1 1266605..1267276(+) (scnR) [Bacillus amyloliquefaciens strain T-5]
ATGAATAACATTTTATACATTGAAGATGACCAAGAAATTGGCCAATTTGTAAAGGATGATTTAGAAGATCGGGGCTATAT
GATTATATGGCTCACTTCTTCCTATAATTACGAAACATATATAGAAAAGGCTGATCTGATCGTGCTTGATATAATGATGC
CCGGTTTAGATGGATTTACAATCGGTCAAAGGATGAAAAAAACACATCCACAGATCCCGCTCTTGCTTTTAACAGCGAGA
ACGGGTCTGGAAGATAAACTGAAAGGCTTAGGATTTGCGGATGATTACGTGACAAAACCCTTTCATCCCGATGAACTGGC
CGCTCGAATCGAAGTATTATTAAGAAGATTTGACAAGACTGCCATTCATGAATTGAAGCTAAAACACTTAAGTGTCCACT
TGAAAGAAAAAAGAATTTTAAATCATCAAAGTCATGAGGAAATATTTTTAACTGATAAGCAGTTAAGGATTTTTTTGCTT
TTGCTTAGACATCCCAATCAAATATTAACAAAGGAACAAATTTATGAAAATATTTGGGAGCAGCCTTATATCGAAGGGGA
TAAGACGTTGATGGTACATATCAGGCATTTACGGCAAAAAATCGAGATCAATCCAAATGAGCCGGAAATTCTTGAAACGA
TCAGAGGGATTGGATACAGGATTAAACAATGA
ATGAATAACATTTTATACATTGAAGATGACCAAGAAATTGGCCAATTTGTAAAGGATGATTTAGAAGATCGGGGCTATAT
GATTATATGGCTCACTTCTTCCTATAATTACGAAACATATATAGAAAAGGCTGATCTGATCGTGCTTGATATAATGATGC
CCGGTTTAGATGGATTTACAATCGGTCAAAGGATGAAAAAAACACATCCACAGATCCCGCTCTTGCTTTTAACAGCGAGA
ACGGGTCTGGAAGATAAACTGAAAGGCTTAGGATTTGCGGATGATTACGTGACAAAACCCTTTCATCCCGATGAACTGGC
CGCTCGAATCGAAGTATTATTAAGAAGATTTGACAAGACTGCCATTCATGAATTGAAGCTAAAACACTTAAGTGTCCACT
TGAAAGAAAAAAGAATTTTAAATCATCAAAGTCATGAGGAAATATTTTTAACTGATAAGCAGTTAAGGATTTTTTTGCTT
TTGCTTAGACATCCCAATCAAATATTAACAAAGGAACAAATTTATGAAAATATTTGGGAGCAGCCTTATATCGAAGGGGA
TAAGACGTTGATGGTACATATCAGGCATTTACGGCAAAAAATCGAGATCAATCCAAATGAGCCGGAAATTCTTGAAACGA
TCAGAGGGATTGGATACAGGATTAAACAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| scnR | Streptococcus mutans UA159 |
36 |
100 |
0.363 |