Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   IAU66_RS04920 Genome accession   NZ_CP061168
Coordinates   993530..996412 (+) Length   960 a.a.
NCBI ID   WP_083059012.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain T-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 988530..1001412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU66_RS04895 - 988968..989735 (+) 768 WP_007409232.1 enoyl-CoA hydratase -
  IAU66_RS04900 - 989760..989945 (-) 186 WP_003155259.1 YhzD family protein -
  IAU66_RS04905 - 990051..990947 (+) 897 WP_003155257.1 ABC transporter ATP-binding protein -
  IAU66_RS04910 - 990940..992199 (+) 1260 WP_014304724.1 ABC transporter permease -
  IAU66_RS04915 - 992310..993533 (+) 1224 WP_014304725.1 DNA repair exonuclease -
  IAU66_RS04920 sbcE 993530..996412 (+) 2883 WP_083059012.1 AAA family ATPase Machinery gene
  IAU66_RS04925 yhaM 996486..997418 (+) 933 Protein_916 3'-5' exoribonuclease YhaM -
  IAU66_RS04930 - 997418..997645 (+) 228 WP_014304727.1 sporulation YhaL family protein -
  IAU66_RS04935 - 997685..998536 (-) 852 WP_003155249.1 peptidylprolyl isomerase -
  IAU66_RS04940 yhzE1 998695..998781 (+) 87 WP_017417375.1 sporulation protein YhzE1 -
  IAU66_RS04945 yhzE2 998906..998992 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  IAU66_RS04950 - 999049..999267 (-) 219 WP_003155245.1 hypothetical protein -
  IAU66_RS04955 - 999328..999858 (-) 531 WP_007409225.1 DUF3267 domain-containing protein -
  IAU66_RS04960 - 1000070..1000411 (+) 342 WP_003155243.1 YhaI family protein -
  IAU66_RS04965 - 1000408..1001019 (-) 612 WP_003155240.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 960 a.a.        Molecular weight: 109662.71 Da        Isoelectric Point: 7.7843

>NTDB_id=420619 IAU66_RS04920 WP_083059012.1 993530..996412(+) (sbcE) [Bacillus amyloliquefaciens strain T-5]
MKITAMHIYQYGKFSDRSFQLSDSPVQVIYGLNEAGKTTLMSFIKSVLFGFPKSKKYEPKNGGVYGGTVELKHGDHGAVK
IERTKGAAEKVRVYTASGEIKDGEWLKQLLSDTDRALYEAIYSFDVFGLQEIQAFNRDKIGEFLLYSSLFGSEAAAKLDG
RLAKELDRMYKPNGRNPRLNQELDTLKRLSAQLKQAEAAEAGYHSLLEEKKSAGGRLQDAEARLKDITEEIKTVKSAIEA
KPLADKKTALESELSSYPDALKQFPKDGMHQLEKYESHLHPKAARLEGLRAKAAELRRQAELLAPNEDLLQTERQLQELS
GEQHMYESRGEQLAAIQSQIRQTSARVSSGLQQLGRHEEDGILSLNTDYEYEWRLQEAVQSAGQARERKTQLDAIFEQAR
LELEEAERKHALTSENILDPAVRKEKEAALQSYKQTADTEGNEWQAHVQQLEKQRAKQKKLFLGAGILFIAIFAMLKEWL
PAALFTGALLLYMLSGMQKPLPSERGGAGHKKKKPTISKEAADLLQEELWRDGRHRQQLIADQAVLEQKEAAYERVIRQY
EEWEAEMAPSEKQAELFMKEMGFSGSPSHLLDAYHVMKDVKKEILNKHELTIEAGRLQKLQRAFEDRVKKLSPSDGRELS
VKERLRVLLAQAERAREEAKRKQALETDLLHAQEQMRELNEEVHYYEQQVKQLFMAAGAKNREHFCELARLNESRRETER
QLREIKTHLSGIGGKQLEPYMSRTVSELEHTVVQKETEKKTLEEKSAQLREKTALLTVKQEQLESSGLVSDLKQQTEMQK
ERVKKTAKEWAALQTVRHIIREKMERHKKVTLPRLLETAGALYGPLTDGRYRKLYFSEADDSIMVMRKDGTVFSAGELSQ
AACEQLYAAIRFALASERESAVSLPFLLDDSFVHFDRQRLERLFDVLNQLSEGGRQILYFTCHEHVSRSFHSGQVMRLLS

Nucleotide


Download         Length: 2883 bp        

>NTDB_id=420619 IAU66_RS04920 WP_083059012.1 993530..996412(+) (sbcE) [Bacillus amyloliquefaciens strain T-5]
ATGAAAATAACGGCAATGCATATTTACCAATACGGAAAATTTTCCGACCGAAGTTTTCAGCTGTCAGATTCTCCCGTGCA
AGTGATCTACGGATTAAATGAAGCGGGCAAAACAACATTGATGTCCTTCATCAAAAGCGTGCTGTTCGGTTTTCCGAAAT
CAAAAAAATACGAACCGAAAAACGGCGGGGTTTACGGCGGCACTGTGGAATTGAAGCATGGCGATCACGGTGCTGTCAAA
ATCGAACGGACAAAAGGCGCTGCCGAAAAAGTCAGAGTGTATACGGCTTCAGGCGAAATCAAGGACGGAGAATGGCTCAA
ACAGCTTCTTTCCGATACAGATCGGGCGCTGTACGAGGCGATCTATTCGTTCGATGTATTCGGACTGCAGGAGATTCAAG
CTTTTAACCGGGACAAAATCGGCGAGTTTCTCCTGTATTCGAGCTTATTCGGGTCGGAAGCGGCGGCAAAGCTTGACGGG
CGGCTGGCAAAAGAACTTGACAGGATGTATAAGCCGAACGGGCGGAACCCCCGCTTAAATCAGGAGTTGGATACATTAAA
GCGGCTCAGCGCCCAGCTGAAACAGGCGGAAGCTGCGGAAGCGGGCTATCACAGCCTTCTGGAAGAGAAAAAAAGCGCCG
GCGGCCGTTTGCAGGATGCCGAAGCACGATTGAAAGACATAACTGAAGAAATCAAAACAGTAAAATCGGCGATAGAAGCA
AAGCCGCTCGCAGACAAAAAAACAGCCTTGGAAAGCGAACTTTCTTCTTATCCGGATGCATTGAAGCAATTCCCGAAGGA
CGGGATGCATCAGCTTGAAAAATACGAATCGCATCTCCATCCGAAAGCGGCCCGTCTTGAGGGACTTCGGGCAAAAGCGG
CTGAACTCAGGCGGCAGGCTGAGCTGCTCGCTCCAAATGAGGACTTGCTGCAAACAGAGCGGCAGCTGCAGGAGCTTTCC
GGCGAGCAGCATATGTACGAATCGCGCGGCGAACAGCTTGCCGCCATCCAATCACAGATCCGGCAGACATCTGCCCGCGT
TTCGTCAGGATTACAGCAGCTCGGAAGACATGAGGAAGACGGCATTCTTTCACTGAACACCGATTATGAATATGAATGGC
GGCTGCAGGAAGCCGTGCAGAGCGCCGGACAGGCAAGAGAAAGAAAGACACAGCTTGATGCGATTTTCGAACAAGCGCGG
CTGGAGCTGGAAGAAGCCGAACGAAAACATGCCTTGACGTCGGAAAACATTTTGGACCCCGCTGTCAGGAAAGAAAAAGA
AGCCGCTTTACAATCATATAAGCAAACGGCTGATACAGAAGGAAACGAATGGCAGGCACATGTACAGCAGCTGGAAAAAC
AGCGCGCCAAACAAAAAAAGCTCTTTCTCGGTGCGGGCATTCTGTTCATTGCAATTTTCGCTATGTTAAAGGAATGGCTG
CCCGCCGCCCTTTTTACCGGCGCTCTGCTGCTGTATATGCTGTCCGGCATGCAAAAGCCGCTGCCGTCAGAAAGAGGAGG
GGCCGGTCACAAGAAAAAGAAGCCGACGATCTCCAAAGAAGCGGCTGACCTTCTGCAGGAAGAGCTTTGGCGTGACGGCC
GGCACCGGCAGCAGCTGATTGCGGATCAAGCCGTGCTTGAACAGAAAGAAGCGGCATATGAAAGAGTCATCCGCCAATAT
GAAGAATGGGAGGCGGAAATGGCGCCGTCTGAAAAACAGGCGGAACTTTTTATGAAGGAAATGGGTTTTTCAGGAAGTCC
TTCCCATCTTCTTGACGCATATCATGTGATGAAAGATGTCAAAAAAGAAATCCTTAATAAGCATGAGCTGACCATTGAAG
CGGGCCGGCTGCAAAAGCTGCAAAGAGCATTTGAGGACCGGGTCAAAAAGCTGAGTCCTTCAGACGGAAGGGAGCTGTCC
GTAAAAGAAAGACTGCGCGTTTTGCTGGCGCAGGCGGAACGGGCCCGTGAGGAAGCAAAACGAAAGCAGGCGCTCGAAAC
GGATCTGCTGCATGCACAAGAGCAAATGCGTGAATTAAATGAAGAAGTCCATTACTACGAACAGCAGGTCAAACAGCTTT
TCATGGCGGCAGGCGCAAAAAATCGCGAACACTTTTGTGAACTCGCCAGACTGAATGAAAGCCGCCGGGAAACAGAGCGG
CAGCTGCGCGAAATCAAAACGCACTTGTCCGGCATAGGCGGAAAACAGCTTGAGCCGTATATGAGCCGCACAGTGTCCGA
ACTTGAACATACAGTCGTTCAGAAGGAAACAGAGAAAAAAACGCTTGAGGAAAAAAGCGCGCAGCTCCGTGAGAAAACCG
CTTTATTAACGGTGAAACAAGAGCAGCTGGAGTCCTCGGGGCTTGTATCCGATTTAAAACAGCAGACAGAAATGCAGAAG
GAGCGCGTGAAAAAAACCGCTAAAGAGTGGGCCGCATTACAGACGGTCAGACACATCATCAGGGAAAAAATGGAGCGGCA
TAAAAAAGTGACGCTTCCCCGTCTGTTAGAAACCGCCGGTGCATTATACGGACCGCTTACGGACGGACGCTACCGCAAAT
TGTATTTCTCCGAGGCGGATGATTCCATTATGGTCATGCGGAAAGACGGAACGGTGTTTTCAGCAGGCGAACTCTCACAG
GCGGCATGCGAGCAGCTTTATGCGGCGATCCGTTTTGCCCTTGCGTCAGAGAGGGAATCTGCGGTATCACTTCCGTTTTT
ACTTGATGACAGTTTTGTCCATTTTGACAGGCAGCGGCTGGAGCGGCTGTTTGATGTGCTGAATCAGCTTTCAGAAGGCG
GGCGGCAGATACTTTATTTCACCTGCCATGAGCATGTCAGCCGGTCTTTTCACAGCGGACAAGTCATGCGGCTCCTGTCA
TAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(1-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

56.846

100

0.571