Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   IAU66_RS03825 Genome accession   NZ_CP061168
Coordinates   787543..788259 (+) Length   238 a.a.
NCBI ID   WP_014304613.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain T-5     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 782543..793259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IAU66_RS03795 - 782720..783097 (+) 378 WP_003155597.1 DUF1992 domain-containing protein -
  IAU66_RS03800 - 783107..783538 (-) 432 WP_003155596.1 Hsp20/alpha crystallin family protein -
  IAU66_RS03805 - 783554..783796 (-) 243 WP_003155595.1 spore germination protein -
  IAU66_RS03810 - 783811..784071 (-) 261 WP_007408496.1 spore germination protein -
  IAU66_RS03815 treP 784343..785758 (+) 1416 WP_003155593.1 PTS system trehalose-specific EIIBC component -
  IAU66_RS03820 treC 785834..787519 (+) 1686 WP_014304612.1 alpha,alpha-phosphotrehalase -
  IAU66_RS03825 treR 787543..788259 (+) 717 WP_014304613.1 trehalose operon repressor Regulator
  IAU66_RS03830 - 788393..789058 (+) 666 WP_003155588.1 NAD(P)H-dependent oxidoreductase -
  IAU66_RS03835 - 789094..789855 (-) 762 WP_024085008.1 YibE/F family protein -
  IAU66_RS03840 - 789852..790991 (-) 1140 WP_024085009.1 YibE/F family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27482.53 Da        Isoelectric Point: 7.3803

>NTDB_id=420612 IAU66_RS03825 WP_014304613.1 787543..788259(+) (treR) [Bacillus amyloliquefaciens strain T-5]
MKVNKYITIYKDMVRQIESGQRKAEDVLPSENDLCDQYGTSRETVRKALNMLAQNGYIQKIKGKGSVILDREKMRFPVSG
LISFKELSETLGKETRTEVHRLGLILPPSEAAKELGTVADEKVWEVVRSRRIDGEHIILDKDYFVKKHVPLLTKAICEDS
IYEYLEGELGLSISYAQKEIVVEPAGEEDRKYLDLGGFSHMAVVKNRVFLEDTSLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=420612 IAU66_RS03825 WP_014304613.1 787543..788259(+) (treR) [Bacillus amyloliquefaciens strain T-5]
ATGAAAGTGAATAAATATATCACAATCTATAAAGATATGGTGCGGCAGATTGAAAGCGGCCAGCGGAAGGCTGAAGACGT
TCTTCCGTCTGAAAATGATTTATGCGATCAATACGGCACATCACGAGAAACCGTCCGTAAAGCGCTCAATATGCTGGCGC
AAAACGGCTACATCCAGAAAATCAAAGGCAAAGGCTCCGTCATATTAGACAGAGAAAAAATGCGCTTTCCCGTCTCAGGC
CTGATCAGCTTCAAAGAGCTTTCGGAAACGCTCGGAAAAGAGACGCGAACGGAGGTTCACCGTCTCGGGCTGATCCTGCC
TCCCTCAGAAGCCGCAAAAGAGCTTGGTACAGTGGCGGATGAAAAGGTGTGGGAAGTCGTCAGATCAAGACGGATTGACG
GAGAACATATTATTTTGGACAAGGATTACTTTGTGAAAAAACATGTGCCTCTATTAACGAAGGCGATTTGTGAAGATTCG
ATCTATGAGTATCTCGAAGGAGAGCTCGGCCTGTCCATCAGCTACGCGCAAAAGGAAATTGTCGTGGAGCCGGCGGGGGA
GGAAGACCGGAAGTATTTGGATCTCGGCGGGTTCAGCCATATGGCGGTCGTGAAAAACCGCGTCTTTTTGGAGGATACCA
GCCTCTTTCAGTACACGGAAAGCCGGCACAGGCTCGATAAATTCCGTTTCGTCGACTTTGCGAGAAGAGAAAAATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.373

99.16

0.42