Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   SFBM_RS05895 Genome accession   NC_015913
Coordinates   1234768..1235727 (-) Length   319 a.a.
NCBI ID   WP_014018021.1    Uniprot ID   -
Organism   Candidatus Arthromitus sp. SFB-mouse-Japan     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1229768..1240727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFBM_RS05875 (SFBM_1139) - 1230230..1231936 (-) 1707 WP_005805573.1 ABC transporter ATP-binding protein -
  SFBM_RS05880 (SFBM_1140) - 1232058..1233026 (-) 969 WP_014018020.1 siderophore ABC transporter substrate-binding protein -
  SFBM_RS05885 (SFBM_1141) - 1233049..1233804 (-) 756 WP_005805569.1 ABC transporter ATP-binding protein -
  SFBM_RS05890 (SFBM_1142) - 1233798..1234778 (-) 981 WP_005805567.1 iron chelate uptake ABC transporter family permease subunit -
  SFBM_RS05895 (SFBM_1143) ceuB 1234768..1235727 (-) 960 WP_014018021.1 ABC transporter permease Machinery gene
  SFBM_RS05900 (SFBM_1144) - 1235891..1236850 (+) 960 WP_005805563.1 ABC transporter substrate-binding protein -
  SFBM_RS05905 (SFBM_1145) - 1236853..1237836 (+) 984 WP_005805561.1 iron ABC transporter permease -
  SFBM_RS05910 (SFBM_1146) - 1237837..1238847 (+) 1011 WP_005805559.1 iron ABC transporter permease -
  SFBM_RS05915 (SFBM_1147) - 1238847..1239635 (+) 789 WP_005805558.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 34931.43 Da        Isoelectric Point: 10.0336

>NTDB_id=42061 SFBM_RS05895 WP_014018021.1 1234768..1235727(-) (ceuB) [Candidatus Arthromitus sp. SFB-mouse-Japan]
MKKRYLILILLLVVLSLISLFLGAKNITIWEILNGDIDSIRIFLVSRLPRLISILIAGVVMSICGLIMQQISQNKFVSPT
TGATIDSAQLGIMVAMIIFPSASIMQKTIISFVFALIGTFIFIIFLRNLKIKNVVFVPLVGIIFGNIIGSITTFLGYKFD
LLQSVSSWMQGNFSMILKGNYELLYLSIPLVIITIVYANMFTVAGMGKDFATNLGLNYDRVVNIGVSIVALATVIVVVTV
GSIPFIGLIVPNLVAMYKGDNVNKSIFDIALVGSVFILICDIIGRVVIYPYEFPIGVTVGVIGSILFLFIVLRRNNCGK

Nucleotide


Download         Length: 960 bp        

>NTDB_id=42061 SFBM_RS05895 WP_014018021.1 1234768..1235727(-) (ceuB) [Candidatus Arthromitus sp. SFB-mouse-Japan]
ATGAAGAAGAGGTATTTAATCTTAATACTACTTTTAGTTGTTTTATCTTTGATTTCACTATTTTTAGGAGCTAAAAATAT
AACGATATGGGAAATCTTAAATGGAGATATTGATAGTATTAGGATTTTTTTGGTGAGTAGATTACCGAGACTCATAAGCA
TCTTGATTGCGGGAGTTGTTATGAGTATATGTGGACTTATAATGCAACAGATTAGTCAAAATAAATTTGTATCGCCAACA
ACTGGAGCAACTATTGATTCAGCACAGCTTGGAATAATGGTAGCTATGATTATATTTCCTAGTGCAAGTATAATGCAAAA
AACAATTATATCTTTTGTGTTTGCATTGATTGGTACATTTATTTTTATAATATTTTTGAGAAATCTCAAGATAAAGAACG
TGGTATTTGTACCATTAGTTGGAATTATTTTTGGTAATATTATTGGATCCATAACGACTTTCTTGGGATATAAGTTTGAT
TTATTGCAGAGTGTTAGTTCGTGGATGCAGGGTAATTTTTCAATGATTCTGAAGGGAAATTATGAGCTTTTATATTTGAG
CATTCCTCTTGTTATAATTACTATAGTTTATGCAAATATGTTTACTGTTGCTGGAATGGGAAAAGATTTTGCTACAAATT
TGGGACTTAATTATGATAGAGTGGTTAATATTGGAGTTTCTATAGTTGCATTAGCAACTGTTATAGTGGTTGTAACAGTT
GGAAGTATACCTTTTATTGGACTTATAGTTCCTAATTTAGTTGCTATGTATAAAGGGGATAATGTAAATAAAAGTATTTT
TGATATTGCGCTTGTTGGTTCTGTGTTTATACTTATTTGTGATATAATTGGACGAGTTGTTATTTATCCATATGAATTTC
CAATAGGAGTTACTGTAGGAGTAATTGGAAGTATATTGTTTCTTTTTATAGTATTAAGGAGGAATAATTGTGGGAAGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.838

96.865

0.483

Multiple sequence alignment