Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   GZH82_RS08925 Genome accession   NZ_CP048279
Coordinates   1920194..1920910 (+) Length   238 a.a.
NCBI ID   WP_037542586.1    Uniprot ID   -
Organism   Staphylococcus sp. MI 10-1553     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1915194..1925910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH82_RS08900 (GZH82_08900) - 1916602..1917405 (+) 804 WP_162682199.1 carbon-nitrogen family hydrolase -
  GZH82_RS08910 (GZH82_08910) - 1918159..1918725 (+) 567 WP_162682200.1 accessory gene regulator AgrB -
  GZH82_RS08915 (GZH82_08915) - 1918727..1918864 (+) 138 WP_162682201.1 cyclic lactone autoinducer peptide -
  GZH82_RS14315 - 1919386..1920180 (+) 795 WP_238989548.1 ATP-binding protein -
  GZH82_RS08925 (GZH82_08925) agrA 1920194..1920910 (+) 717 WP_037542586.1 LytTR family DNA-binding domain-containing protein Regulator
  GZH82_RS08930 (GZH82_08930) - 1920970..1921635 (-) 666 Protein_1767 PfkB family carbohydrate kinase -
  GZH82_RS08935 (GZH82_08935) - 1921639..1923123 (-) 1485 WP_162682203.1 sucrose-6-phosphate hydrolase -
  GZH82_RS08940 (GZH82_08940) - 1923178..1924125 (-) 948 WP_162682204.1 LacI family DNA-binding transcriptional regulator -
  GZH82_RS08945 (GZH82_08945) - 1924361..1925443 (+) 1083 WP_162682205.1 YeeE/YedE family protein -
  GZH82_RS08950 (GZH82_08950) - 1925468..1925692 (+) 225 WP_162682206.1 sulfurtransferase TusA family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28003.09 Da        Isoelectric Point: 5.0893

>NTDB_id=420560 GZH82_RS08925 WP_037542586.1 1920194..1920910(+) (agrA) [Staphylococcus sp. MI 10-1553]
MKILICEDDPKQRERMVSIIENYIMIEEKPMEIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=420560 GZH82_RS08925 WP_037542586.1 1920194..1920910(+) (agrA) [Staphylococcus sp. MI 10-1553]
ATGAAAATTTTAATTTGTGAGGATGATCCTAAACAACGTGAACGCATGGTGTCCATTATAGAAAATTATATTATGATTGA
AGAGAAGCCGATGGAAATTGAGCTTGCTACAAATGATCCCTACGCTATTTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTGGGGAGCGAAATTCGTAAACACGATCCT
GTAGGGAATATTATTTTTGTGACGAGTCATAGTGAACTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGAACGCGCATTATCGATTGTTTAGAAACGGCGTTAAAACGGCTTGATTTAT
TAACAAAAGATCACACTGTTGAAACTTTGGAACTCAAACGTGGGACAAGTTCTGTTTATGTGAACTATGATGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAGTTTTACGGCAATTTGAA
AGAATTAGCACAACTCGATGATCGGTTCTTCAGATGTCACAATAGTTATGTGCTGAATAGAAGGAATATTACGAGTGTCG
ATACGAAAGAGCGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTCTCGGTACGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.613

100

0.836

Multiple sequence alignment