Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SFBM_RS00800 Genome accession   NC_015913
Coordinates   156049..156285 (-) Length   78 a.a.
NCBI ID   WP_005807464.1    Uniprot ID   A0AAV3EI49
Organism   Candidatus Arthromitus sp. SFB-mouse-Japan     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 151049..161285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFBM_RS00775 (SFBM_0139) - 151774..152619 (+) 846 WP_007441037.1 hypothetical protein -
  SFBM_RS00780 (SFBM_0140) - 152619..154328 (+) 1710 WP_014017811.1 phage tail protein -
  SFBM_RS00785 (SFBM_0141) - 154522..154953 (+) 432 WP_007439697.1 holin family protein -
  SFBM_RS00790 (SFBM_0143) - 155098..155748 (+) 651 WP_005807468.1 N-acetylmuramoyl-L-alanine amidase -
  SFBM_RS00795 (SFBM_0144) - 155795..156043 (-) 249 WP_005807466.1 DUF4160 domain-containing protein -
  SFBM_RS00800 (SFBM_0145) HI0659 156049..156285 (-) 237 WP_005807464.1 helix-turn-helix domain-containing protein Machinery gene
  SFBM_RS00805 (SFBM_0146) - 156293..156550 (-) 258 WP_005807462.1 DUF2442 domain-containing protein -
  SFBM_RS00810 (SFBM_0147) - 156743..156955 (+) 213 WP_005807460.1 DUF4214 domain-containing protein -
  SFBM_RS00815 (SFBM_0148) - 157376..158908 (+) 1533 WP_005807458.1 hypothetical protein -
  SFBM_RS00820 (SFBM_0149) lepB 158978..159670 (+) 693 WP_005807456.1 signal peptidase I -

Sequence

Protein


Download         Length: 78 a.a.        Molecular weight: 8873.63 Da        Isoelectric Point: 10.5513

>NTDB_id=42052 SFBM_RS00800 WP_005807464.1 156049..156285(-) (HI0659) [Candidatus Arthromitus sp. SFB-mouse-Japan]
MIEEKIKEIVSEIIKLRQENGLTQKQLEELSNIKQPIIARMEKGTNIPQLNTILKLLKPLGKTIAIVPLETTKPTKSR

Nucleotide


Download         Length: 237 bp        

>NTDB_id=42052 SFBM_RS00800 WP_005807464.1 156049..156285(-) (HI0659) [Candidatus Arthromitus sp. SFB-mouse-Japan]
ATGATTGAAGAAAAGATAAAAGAAATTGTATCCGAAATAATAAAACTTAGACAGGAAAATGGACTCACACAGAAACAACT
TGAAGAGTTAAGCAACATAAAACAACCAATTATAGCGAGGATGGAAAAAGGAACAAATATACCACAACTTAACACTATTT
TAAAATTACTAAAACCCTTAGGGAAAACAATTGCAATAGTTCCTCTTGAAACAACAAAACCAACTAAATCGAGGTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(13-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

57.534

93.59

0.538

Multiple sequence alignment