Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   M655_RS11175 Genome accession   NZ_CP048274
Coordinates   2221214..2221600 (-) Length   128 a.a.
NCBI ID   WP_235694694.1    Uniprot ID   -
Organism   Brevibacillus sp. NSP2.1     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2216214..2226600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M655_RS11145 (M655_010995) - 2216369..2216851 (+) 483 WP_035422728.1 ECF transporter S component -
  M655_RS11150 - 2216839..2216967 (+) 129 WP_275051279.1 hypothetical protein -
  M655_RS11155 (M655_011000) - 2216971..2217405 (+) 435 WP_025846246.1 ABC transporter ATP-binding protein -
  M655_RS11160 (M655_011005) - 2217374..2217526 (+) 153 WP_155808594.1 hypothetical protein -
  M655_RS11165 (M655_011010) - 2217586..2219424 (+) 1839 WP_026557354.1 ABC transporter ATP-binding protein -
  M655_RS11170 (M655_011015) - 2219393..2221129 (+) 1737 WP_026557353.1 ABC transporter ATP-binding protein -
  M655_RS11175 (M655_011020) nucA/comI 2221214..2221600 (-) 387 WP_235694694.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  M655_RS11180 (M655_011025) - 2221830..2223137 (-) 1308 WP_005831067.1 MFS transporter -
  M655_RS11185 (M655_011030) - 2223373..2224971 (+) 1599 WP_007779109.1 amidohydrolase -
  M655_RS11190 (M655_011035) - 2225078..2225965 (-) 888 WP_005831071.1 DMT family transporter -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14136.64 Da        Isoelectric Point: 4.9555

>NTDB_id=420500 M655_RS11175 WP_235694694.1 2221214..2221600(-) (nucA/comI) [Brevibacillus sp. NSP2.1]
MFAEQQGVPTDSAATQADVILHFPRERYPETAQHIRSAIEKGQPAVCTIDRKAADKHREESLSGIPTKRGYDRDEWPMAM
CKEGGKGADIAYVSPSDNRGAGSWIANQLEDYPDGTRVQIVIDDQPAH

Nucleotide


Download         Length: 387 bp        

>NTDB_id=420500 M655_RS11175 WP_235694694.1 2221214..2221600(-) (nucA/comI) [Brevibacillus sp. NSP2.1]
CTGTTTGCCGAGCAGCAGGGCGTCCCGACCGACAGCGCTGCGACGCAGGCGGATGTCATTTTGCATTTTCCCCGCGAACG
GTATCCCGAGACGGCGCAGCACATTCGCTCCGCCATCGAAAAAGGCCAGCCTGCCGTCTGTACCATCGACCGCAAAGCGG
CGGACAAGCATCGCGAGGAATCGCTTTCCGGCATTCCGACGAAGCGCGGCTACGATCGGGACGAGTGGCCGATGGCGATG
TGCAAGGAAGGCGGCAAGGGCGCCGATATCGCTTACGTCTCCCCTTCCGACAACCGCGGAGCAGGCTCGTGGATTGCCAA
CCAGCTTGAGGATTACCCGGACGGCACCCGCGTGCAGATTGTCATTGACGATCAGCCCGCGCATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(25-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

59.459

86.719

0.516

Multiple sequence alignment