Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   IB936_RS08485 Genome accession   NZ_CP061133
Coordinates   1706208..1706882 (-) Length   224 a.a.
NCBI ID   WP_002982458.1    Uniprot ID   A0ABU0A9I5
Organism   Streptococcus pyogenes strain BSAC_bs472 isolate Invasive disease     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1701208..1711882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IB936_RS08470 (IB936_08470) - 1702846..1704234 (-) 1389 WP_002993547.1 sensor histidine kinase -
  IB936_RS08475 (IB936_08475) - 1704231..1704884 (-) 654 WP_002991237.1 response regulator transcription factor -
  IB936_RS08480 (IB936_08480) - 1704978..1706195 (-) 1218 WP_002991239.1 ABC transporter permease -
  IB936_RS08485 (IB936_08485) amiE 1706208..1706882 (-) 675 WP_002982458.1 ABC transporter ATP-binding protein Regulator
  IB936_RS08490 (IB936_08490) - 1706869..1708137 (-) 1269 WP_011285226.1 efflux RND transporter periplasmic adaptor subunit -
  IB936_RS08495 (IB936_08495) - 1708561..1708845 (-) 285 WP_002982442.1 hypothetical protein -
  IB936_RS08500 (IB936_08500) - 1708993..1709289 (-) 297 WP_002993562.1 DUF4298 domain-containing protein -
  IB936_RS08505 (IB936_08505) - 1709431..1711362 (-) 1932 WP_011529065.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24826.67 Da        Isoelectric Point: 5.7977

>NTDB_id=420477 IB936_RS08485 WP_002982458.1 1706208..1706882(-) (amiE) [Streptococcus pyogenes strain BSAC_bs472 isolate Invasive disease]
MLNLKDIRKSYHLGTEEFAILKGIDLEVNEGDFLAIMGPSGSGKSTLMNIIGCLDKPGSGSYAIEGRDVSSLSDNELADL
RNQKIGFVFQNFNLMPKLTACQNVELPLTYMNVPKKERRKRALEMLKLVGLEERSEFKPMELSGGQKQRVAIARALVTNP
SFILGDEPTGALDTKTSVQIMDLFKQFNDNGKTIIIITHEPEVAALCKKTVILRDGNIEHSDIE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=420477 IB936_RS08485 WP_002982458.1 1706208..1706882(-) (amiE) [Streptococcus pyogenes strain BSAC_bs472 isolate Invasive disease]
TTGTTAAACCTTAAAGATATTCGAAAAAGCTATCATCTTGGAACTGAAGAATTTGCGATTTTAAAAGGAATCGATTTAGA
AGTTAACGAGGGTGACTTTTTAGCCATCATGGGACCATCAGGTTCGGGAAAGTCAACATTGATGAATATCATTGGGTGTT
TAGATAAGCCTGGCTCTGGCTCATATGCCATTGAAGGCAGAGACGTGTCATCCTTATCTGATAATGAACTTGCTGATTTG
CGTAATCAAAAAATCGGCTTTGTTTTTCAAAATTTTAACCTGATGCCCAAGCTAACAGCTTGTCAAAATGTCGAATTGCC
CTTGACTTATATGAATGTTCCTAAAAAAGAACGTCGCAAACGAGCCCTAGAGATGTTAAAGCTCGTAGGATTAGAAGAAC
GTAGTGAATTTAAACCGATGGAGCTATCTGGTGGGCAAAAACAGCGTGTAGCGATTGCAAGAGCTTTAGTCACTAACCCG
AGTTTTATCCTTGGTGATGAGCCAACAGGTGCACTAGACACAAAAACCAGCGTCCAAATCATGGACCTATTTAAACAATT
CAATGATAACGGCAAAACGATTATTATCATCACACACGAGCCTGAAGTAGCTGCCTTATGCAAAAAGACGGTGATCCTAA
GAGATGGTAATATAGAACATTCCGATATAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.454

100

0.366

Multiple sequence alignment