Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   M654_RS17065 Genome accession   NZ_CP048273
Coordinates   3264119..3266491 (-) Length   790 a.a.
NCBI ID   WP_035428386.1    Uniprot ID   -
Organism   Bacillus sp. NSP9.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3259119..3271491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M654_RS17045 (M654_016990) - 3262062..3263120 (-) 1059 WP_026588066.1 AI-2E family transporter -
  M654_RS17050 (M654_016995) - 3263211..3263342 (-) 132 WP_077736334.1 YrzQ family protein -
  M654_RS17055 (M654_017000) - 3263358..3263549 (-) 192 WP_006637793.1 hypothetical protein -
  M654_RS17060 (M654_017005) - 3263565..3264029 (-) 465 WP_026588067.1 PRC-barrel domain-containing protein -
  M654_RS17065 (M654_017010) recD2 3264119..3266491 (-) 2373 WP_035428386.1 ATP-dependent RecD-like DNA helicase Machinery gene
  M654_RS17070 (M654_017015) - 3266562..3267212 (-) 651 WP_026588069.1 tetratricopeptide repeat protein -
  M654_RS17075 (M654_017020) mnmA 3267310..3268428 (-) 1119 WP_026588070.1 tRNA 2-thiouridine(34) synthase MnmA -
  M654_RS17080 (M654_017025) - 3268512..3269651 (-) 1140 WP_026588071.1 cysteine desulfurase family protein -
  M654_RS17085 (M654_017030) cymR 3269671..3270087 (-) 417 WP_026588072.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 790 a.a.        Molecular weight: 89037.63 Da        Isoelectric Point: 4.9445

>NTDB_id=420469 M654_RS17065 WP_035428386.1 3264119..3266491(-) (recD2) [Bacillus sp. NSP9.1]
MQMEEASFLKGTVTGVIYHNETNLYTVLKVKVQETSESFEEKSVSVTGYFPAVFEDETYTFYGKTASHPKFGLQFQADHF
KKEVPTTKEGVIQYLASDLFEGIGKKTAEEIVKKLGEGAINKILEDAAVLYDVPKLSKKKADKLASSLQQHQGLEQIMIS
LSEFGFGPQLSMKIYQAYESETLDKIRENPYQLVKDVEGIGFIKADELGGRMGISGKHAERIKAALLYTIEAACLQEGHT
YIETKQLIIETQKLLNQSTGDEKVTEMDVADQIIALGEQKELFVEDDRCYYPSLYYAEQNFAKRVRKIAEQTEYDEQFPE
SEFLLALGELEERMQVQYAPSQKEAIQKALMSPMLLLTGGPGTGKTTVIRGIVELYSELHGLSLNPADYKKDETFPFVLA
APTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHDEDNPIEGKLVIIDETSMLDIWLANQLFKAIPDHVQVIMVGDEDQ
LPSVGPGQVLRDLLASNVIPAVRLTDIYRQAEGSSIVEMAHEMKKGYLPKNLTAPTKDRSFIRCRQQQIKEVVEKVVKNA
LQKGYSARDIQVLAPMYKGPAGINELNLTLQNILNPPKPKGREIKFGEVVYRTGDKILQLVNQPEHNVFNGDMGEIVSIF
YAKENTEKEDMAVISFDGNEITFTKKDFNQFTHAYCCSIHKSQGSEFPIVILPIVKSYYRMLRRNLLYTAITRSKKFLIL
CGEEEALEWGVRNKESSERQTSLKRRLQQAAHEEDEELMALQKELPFSVFDANIGMEGVTPFDFMEEEAE

Nucleotide


Download         Length: 2373 bp        

>NTDB_id=420469 M654_RS17065 WP_035428386.1 3264119..3266491(-) (recD2) [Bacillus sp. NSP9.1]
ATGCAAATGGAAGAAGCCTCTTTTCTGAAAGGGACGGTAACGGGTGTCATTTATCATAATGAAACAAACCTCTACACCGT
CCTAAAAGTAAAAGTGCAGGAAACATCGGAGTCTTTTGAAGAAAAAAGCGTTTCAGTAACGGGATACTTCCCTGCGGTCT
TTGAAGATGAAACCTATACATTTTACGGAAAAACCGCCTCCCATCCGAAGTTTGGCCTGCAATTTCAAGCGGATCATTTT
AAAAAAGAAGTTCCCACGACAAAAGAAGGCGTCATTCAGTATTTAGCAAGCGATTTGTTTGAAGGCATCGGCAAAAAAAC
GGCCGAAGAGATCGTCAAAAAGCTTGGAGAGGGTGCGATCAATAAAATTTTAGAGGACGCTGCCGTCCTGTATGATGTGC
CAAAGCTCTCCAAAAAAAAGGCGGATAAGCTTGCCTCAAGCCTTCAGCAGCATCAGGGGCTTGAGCAGATTATGATCTCC
TTGAGTGAATTCGGCTTCGGGCCGCAGCTTTCCATGAAAATTTACCAGGCATACGAATCGGAAACCCTTGATAAAATCCG
GGAAAATCCGTACCAGCTTGTCAAGGATGTGGAAGGCATCGGCTTTATCAAGGCAGATGAACTAGGCGGAAGAATGGGGA
TTTCAGGCAAACATGCCGAACGGATCAAGGCGGCGCTTTTATATACGATTGAAGCGGCATGCCTTCAGGAAGGACATACG
TACATAGAAACCAAGCAGCTGATCATCGAGACGCAAAAGCTGTTGAACCAGTCGACAGGCGATGAGAAAGTGACGGAAAT
GGATGTGGCGGATCAAATCATTGCGCTTGGCGAGCAAAAAGAACTTTTCGTAGAAGACGACAGATGCTACTATCCATCGC
TTTACTACGCTGAACAAAACTTTGCCAAAAGAGTCCGGAAGATCGCCGAACAGACCGAATACGATGAGCAGTTTCCCGAA
TCTGAATTTCTGCTTGCTTTAGGCGAGCTTGAAGAGCGGATGCAGGTTCAATATGCACCAAGCCAAAAGGAAGCGATACA
AAAGGCGCTGATGTCGCCGATGCTGCTTTTAACAGGCGGCCCCGGCACGGGTAAAACGACCGTCATCAGAGGAATCGTTG
AATTGTACAGCGAGCTTCACGGCTTGAGTCTGAATCCCGCCGATTATAAGAAAGACGAAACCTTTCCGTTTGTATTGGCT
GCGCCCACAGGAAGAGCGGCAAAACGGATGAGCGAGTCGACAGGTCTCCCGGCTGTCACGATCCACAGACTTCTCGGCTG
GAACGGCGCCGAAGGTTTTACACATGATGAAGACAACCCGATCGAAGGGAAGCTGGTCATCATCGATGAAACGAGCATGC
TTGATATATGGCTGGCCAACCAATTGTTTAAAGCGATTCCCGATCATGTACAGGTGATTATGGTCGGGGATGAAGACCAG
CTCCCGTCTGTCGGTCCTGGACAGGTGCTGAGAGACCTGCTCGCATCAAACGTGATCCCGGCTGTCAGACTAACCGATAT
TTACAGGCAGGCCGAAGGGTCGTCCATTGTGGAAATGGCGCATGAAATGAAAAAAGGCTACCTCCCGAAAAATTTGACGG
CGCCGACGAAAGACCGCTCTTTTATCCGCTGCCGCCAACAGCAGATCAAGGAGGTTGTAGAAAAAGTCGTCAAAAATGCG
CTGCAAAAAGGGTATTCAGCACGGGACATTCAAGTGCTTGCCCCGATGTACAAAGGACCGGCCGGTATCAATGAATTGAA
CTTGACTCTGCAAAACATCCTGAATCCGCCGAAACCGAAGGGCAGAGAAATCAAATTCGGGGAAGTCGTATACCGGACGG
GCGATAAAATTCTTCAGCTTGTCAACCAGCCTGAACACAATGTATTCAACGGCGACATGGGCGAGATCGTCTCCATCTTT
TATGCAAAAGAAAACACGGAAAAAGAAGATATGGCGGTCATCTCTTTTGACGGCAACGAAATCACATTTACCAAAAAAGA
TTTTAACCAATTTACACATGCGTATTGCTGCTCGATTCACAAATCGCAGGGCAGCGAATTCCCGATCGTGATTCTTCCCA
TTGTCAAAAGCTATTACAGGATGCTGAGAAGAAACCTGCTGTATACAGCCATCACAAGAAGCAAAAAATTCCTGATTTTG
TGCGGAGAAGAGGAGGCTCTTGAATGGGGCGTCAGAAATAAAGAATCCTCGGAACGGCAGACGTCTCTTAAAAGAAGGCT
GCAACAGGCCGCCCATGAAGAAGATGAAGAGCTGATGGCGCTCCAAAAGGAACTGCCTTTCAGCGTATTTGACGCCAATA
TCGGAATGGAGGGTGTCACACCGTTTGATTTTATGGAAGAAGAGGCGGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(338-546)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(673-721)

Helix-hairpin-helix containing domain (HHH_RecD2)

(151-241)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(586-652)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

82.003

99.873

0.819

Multiple sequence alignment