Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M654_RS00250 Genome accession   NZ_CP048273
Coordinates   45753..46043 (+) Length   96 a.a.
NCBI ID   WP_085959887.1    Uniprot ID   -
Organism   Bacillus sp. NSP9.1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40753..51043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M654_RS00235 (M654_000235) - 40952..42280 (-) 1329 WP_035428862.1 G5 and 3D domain-containing protein -
  M654_RS00240 (M654_000240) - 42397..43164 (-) 768 WP_026589832.1 TatD family hydrolase -
  M654_RS00245 (M654_000245) metG 43258..45246 (-) 1989 WP_026589833.1 methionine--tRNA ligase -
  M654_RS00250 (M654_000250) abrB 45753..46043 (+) 291 WP_085959887.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  M654_RS00255 (M654_000255) rsmI 46093..46968 (-) 876 WP_026589834.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  M654_RS00260 (M654_000260) - 46892..47242 (-) 351 WP_051290501.1 GIY-YIG nuclease family protein -
  M654_RS00265 (M654_000265) - 47229..47972 (-) 744 WP_026589835.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  M654_RS00270 (M654_000270) yabA 48029..48391 (-) 363 WP_026589836.1 DNA replication initiation control protein YabA -
  M654_RS00275 (M654_000275) - 48406..49233 (-) 828 WP_026589837.1 stage 0 sporulation family protein -
  M654_RS00280 (M654_000280) holB 49236..50225 (-) 990 WP_026589838.1 DNA polymerase III subunit delta' -
  M654_RS00285 (M654_000285) - 50237..50677 (-) 441 WP_026589839.1 YaaR family protein -
  M654_RS00290 (M654_000290) - 50689..51018 (-) 330 WP_026589840.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10680.43 Da        Isoelectric Point: 5.1848

>NTDB_id=420412 M654_RS00250 WP_085959887.1 45753..46043(+) (abrB) [Bacillus sp. NSP9.1]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=420412 M654_RS00250 WP_085959887.1 45753..46043(+) (abrB) [Bacillus sp. NSP9.1]
ATGAATATGAAATCTACAGGTATCGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATTGAACTTCGCCGTAC
ACTTGGAATCGCAGAAAAAGACGCTCTTGAAATCTATGTTGACGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTTTCTGATGACAACCTTAAACTTGCCGGCGGTAAATTGGTTCTTAGCCCAGAAGGC
GCTGAGCAAATCATCAACGAGATTCAAGCACAACTTCAATCTCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment