Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GYM68_RS07095 Genome accession   NZ_CP048271
Coordinates   1498083..1499459 (-) Length   458 a.a.
NCBI ID   WP_220232193.1    Uniprot ID   -
Organism   Lactobacillus panisapium strain ESL0409     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1493083..1504459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYM68_RS07075 (GYM68_07095) - 1493390..1493833 (-) 444 WP_220232190.1 Mini-ribonuclease 3 -
  GYM68_RS07080 (GYM68_07100) cysS 1493826..1495250 (-) 1425 WP_220232191.1 cysteine--tRNA ligase -
  GYM68_RS07085 (GYM68_07105) - 1495586..1496416 (+) 831 WP_220232192.1 SDR family oxidoreductase -
  GYM68_RS07090 (GYM68_07110) gltX 1496508..1498007 (-) 1500 WP_103752441.1 glutamate--tRNA ligase -
  GYM68_RS07095 (GYM68_07115) radA 1498083..1499459 (-) 1377 WP_220232193.1 DNA repair protein RadA Machinery gene
  GYM68_RS07100 (GYM68_07120) - 1499459..1500007 (-) 549 WP_220220007.1 dUTP diphosphatase -
  GYM68_RS07105 (GYM68_07125) - 1500258..1500560 (+) 303 WP_220232194.1 hypothetical protein -
  GYM68_RS07110 (GYM68_07130) pepC 1500676..1502022 (+) 1347 WP_220232195.1 aminopeptidase C -
  GYM68_RS07115 (GYM68_07135) galT 1502091..1503569 (-) 1479 WP_220232196.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49945.78 Da        Isoelectric Point: 7.3875

>NTDB_id=420403 GYM68_RS07095 WP_220232193.1 1498083..1499459(-) (radA) [Lactobacillus panisapium strain ESL0409]
MAKIKTKYKCHSCGYISASYLGRCPNCGAWNQFEKETETVQARSTKGSPSRLIKKTGINEPVKITAVKAEKEERIKTSMG
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSELSATYRVLYVSGEESANQIKLRADRLGLSGNEMMLYPETDMEDI
RQQIDTLKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDEHHAYRILHSVKNRFGAANEIGMFEMVNKGLQEVTNPSAIFLDERLPNSTGSAIVVSLEGTRPILAEIQALVTPTA
FGYAKRTTSGIDFNRAGLLLAVLEKRGNLMLQNQDVYLTATGGIRLNEPAVDLAVVMAIASSYKNEEILPTDCFVGEVGL
TGEVRRVNQIDARIKEAAKTGFKRIFIPKHNMRASLQNLGIEVIPVASIPQALKLVLG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=420403 GYM68_RS07095 WP_220232193.1 1498083..1499459(-) (radA) [Lactobacillus panisapium strain ESL0409]
ATGGCGAAGATTAAAACTAAGTACAAATGTCATTCCTGTGGTTATATTTCTGCCAGTTATTTGGGCCGCTGTCCTAATTG
CGGTGCTTGGAATCAGTTTGAAAAAGAGACTGAAACAGTCCAAGCTCGTTCCACTAAGGGCAGTCCGAGCCGGTTAATTA
AGAAGACTGGGATTAATGAACCAGTTAAGATTACCGCTGTTAAGGCTGAAAAAGAAGAGCGGATCAAAACGAGCATGGGT
GAGTTAAACCGTGTTTTAGGAGGTGGAATAGTACCAGGCTCATTGGTCTTAATCGGTGGGGATCCCGGAATCGGGAAATC
AACTTTAATGTTACAGATCATGAGTGAATTGTCTGCAACCTACCGGGTTTTATACGTATCCGGTGAGGAATCTGCCAATC
AGATCAAATTGCGCGCAGACCGGTTAGGTCTTAGTGGTAATGAGATGATGCTTTATCCAGAAACTGATATGGAGGATATT
AGGCAACAGATTGACACCCTTAAACCCGATTTTGTCGTAATCGATTCGATTCAAACAATGAACGAACCTAGTCTTGATTC
AATGACCGGTTCGGCCTCACAGGTACGTGAAGTGACCAGTGAATTAATGAAAATCGCGAAAATGGATGCGATTACGGTTT
TTGTGATCGGGCACGTTACTAAAGAAGGTGCCATTGCGGGTCCCAAGATTCTTGAGCACATGGTTGACACAGTTCTGTAT
TTTGAAGGCGATGAGCATCATGCGTACCGAATTCTCCATTCGGTTAAAAATCGTTTTGGTGCTGCCAATGAAATCGGGAT
GTTTGAAATGGTCAATAAGGGGCTGCAAGAAGTAACCAACCCGTCAGCAATCTTTCTTGATGAGCGCTTGCCAAATTCAA
CTGGTTCGGCCATTGTCGTATCACTAGAAGGTACTCGCCCAATATTAGCTGAAATTCAGGCACTGGTTACACCAACAGCC
TTTGGTTATGCGAAAAGAACAACTTCTGGAATTGACTTTAACCGCGCTGGCTTATTATTAGCGGTGCTAGAAAAAAGGGG
CAATTTAATGCTCCAAAACCAGGATGTCTACTTAACAGCTACTGGTGGTATTCGGTTAAATGAACCGGCTGTCGACTTAG
CAGTAGTAATGGCAATTGCTTCCAGCTATAAAAATGAAGAAATTTTACCGACAGACTGTTTTGTCGGTGAAGTTGGTTTA
ACCGGTGAGGTGCGTCGGGTCAATCAAATCGATGCCCGCATTAAAGAAGCTGCTAAAACAGGTTTTAAGCGCATTTTTAT
TCCTAAACACAACATGCGGGCTAGTCTGCAGAATCTTGGCATTGAAGTGATACCAGTGGCTAGCATCCCACAGGCATTGA
AATTGGTTTTAGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

AAA domain (AAA_25)

(69-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

59.081

99.782

0.59
  radA Streptococcus pneumoniae Rx1

59.081

99.782

0.59
  radA Streptococcus pneumoniae D39

59.081

99.782

0.59
  radA Streptococcus pneumoniae R6

59.081

99.782

0.59
  radA Streptococcus pneumoniae TIGR4

59.081

99.782

0.59
  radA Streptococcus mitis NCTC 12261

59.081

99.782

0.59
  radA Bacillus subtilis subsp. subtilis str. 168

56.863

100

0.57

Multiple sequence alignment