Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GYM70_RS06780 Genome accession   NZ_CP048269
Coordinates   1382029..1383405 (-) Length   458 a.a.
NCBI ID   WP_220234721.1    Uniprot ID   -
Organism   Lactobacillus panisapium strain ESL0413     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1377029..1388405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYM70_RS06760 (GYM70_06710) - 1377335..1377778 (-) 444 WP_103752444.1 Mini-ribonuclease 3 -
  GYM70_RS06765 (GYM70_06715) cysS 1377771..1379195 (-) 1425 WP_220234719.1 cysteine--tRNA ligase -
  GYM70_RS06770 (GYM70_06720) - 1379532..1380362 (+) 831 WP_220234720.1 SDR family oxidoreductase -
  GYM70_RS06775 (GYM70_06725) gltX 1380454..1381953 (-) 1500 WP_103752441.1 glutamate--tRNA ligase -
  GYM70_RS06780 (GYM70_06730) radA 1382029..1383405 (-) 1377 WP_220234721.1 DNA repair protein RadA Machinery gene
  GYM70_RS06785 (GYM70_06735) - 1383405..1383953 (-) 549 WP_220220007.1 dUTP diphosphatase -
  GYM70_RS06790 (GYM70_06740) - 1384205..1384507 (+) 303 WP_220234722.1 hypothetical protein -
  GYM70_RS06795 (GYM70_06745) pepC 1384627..1385973 (+) 1347 WP_220234723.1 C1 family peptidase -
  GYM70_RS06800 (GYM70_06750) galT 1386042..1387520 (-) 1479 WP_220234724.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49973.83 Da        Isoelectric Point: 7.3875

>NTDB_id=420369 GYM70_RS06780 WP_220234721.1 1382029..1383405(-) (radA) [Lactobacillus panisapium strain ESL0413]
MAKIKTKYKCHSCGYISASYLGRCPNCGAWNQFEKETETVQARSTKGSPSRLIKKTGINEPVKITAVKAEKEERIKTSMG
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSELSATYRVLYVSGEESANQIKLRADRLGLSGNEMMLYPETDMEDI
RQQIDTLKPDFVVIDSIQTMNEPSLDSMTGSASQVREVTSELMKIAKMDAITVFVIGHVTKEGAIAGPKILEHMVDTVLY
FEGDEHHAYRILHSVKNRFGAANEIGMFEMVNKGLQEVTNPSAIFLDERLPNSTGSAIVVSLEGTRPILAEIQALVTPTA
FGYAKRTTSGIDFNRAGLLLAVLEKRGNLMLQNQDVYLTATGGIRLNEPAVDLAVVMAIASSYKNEEILPTDCFVGEVGL
TGEVRRVNQIDARIKEAAKTGFKRIFIPKHNMRVSLQNLGIEVIPVASIPQALKLVLG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=420369 GYM70_RS06780 WP_220234721.1 1382029..1383405(-) (radA) [Lactobacillus panisapium strain ESL0413]
ATGGCGAAGATTAAAACTAAGTACAAATGTCATTCCTGTGGTTATATTTCTGCCAGTTATTTGGGCCGCTGTCCTAATTG
CGGTGCTTGGAATCAGTTTGAAAAAGAGACTGAAACAGTCCAAGCTCGTTCCACTAAGGGCAGTCCGAGCCGGTTAATTA
AGAAGACTGGGATTAATGAACCAGTTAAGATTACCGCTGTTAAGGCTGAAAAAGAAGAGCGGATCAAAACGAGCATGGGT
GAGTTAAACCGTGTTTTAGGCGGTGGAATAGTACCAGGCTCATTGGTCTTAATTGGTGGGGATCCCGGAATCGGGAAATC
AACTTTAATGTTACAAATCATGAGTGAATTGTCCGCAACCTACCGGGTTTTATACGTATCCGGTGAGGAATCTGCCAATC
AGATCAAATTGCGCGCAGACCGGTTAGGTCTTAGTGGTAATGAGATGATGCTTTATCCAGAAACCGATATGGAGGATATT
AGGCAACAGATTGACACCCTTAAACCCGATTTTGTCGTAATCGACTCGATTCAAACGATGAACGAGCCTAGTCTTGATTC
AATGACCGGTTCGGCCTCGCAGGTACGTGAAGTCACCAGTGAATTGATGAAAATCGCGAAAATGGATGCGATTACGGTTT
TTGTGATCGGGCACGTTACTAAAGAAGGTGCCATTGCGGGTCCTAAGATTCTTGAGCACATGGTTGACACGGTTCTGTAT
TTTGAAGGCGATGAGCATCATGCGTACCGAATTCTCCATTCGGTTAAAAATCGTTTTGGTGCTGCCAATGAAATCGGGAT
GTTTGAAATGGTCAATAAGGGGCTGCAAGAAGTAACCAACCCGTCAGCAATCTTTCTTGATGAGCGCTTGCCAAATTCAA
CTGGTTCGGCCATTGTCGTATCACTAGAAGGTACTCGCCCAATATTAGCTGAAATTCAGGCACTGGTTACACCAACAGCC
TTTGGTTATGCGAAAAGAACAACTTCTGGAATTGACTTTAACCGCGCGGGCTTATTATTAGCGGTGCTAGAAAAAAGGGG
CAATTTAATGCTCCAAAACCAGGATGTCTACTTAACAGCTACTGGTGGTATTCGGTTAAATGAACCGGCTGTCGACTTAG
CAGTAGTAATGGCAATTGCTTCCAGCTATAAAAATGAAGAAATTTTACCGACAGATTGTTTTGTTGGTGAAGTTGGTTTA
ACAGGTGAGGTGCGTCGGGTCAATCAAATCGATGCCCGCATTAAAGAAGCTGCTAAAACAGGTTTTAAGCGCATTTTTAT
TCCTAAACACAACATGCGGGTTAGTCTGCAGAACCTTGGCATTGAAGTGATACCAGTGGCTAGCATCCCACAGGCATTGA
AATTGGTTTTAGGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)

AAA domain (AAA_25)

(69-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

59.081

99.782

0.59
  radA Streptococcus mitis NCTC 12261

59.081

99.782

0.59
  radA Streptococcus pneumoniae Rx1

59.081

99.782

0.59
  radA Streptococcus pneumoniae D39

59.081

99.782

0.59
  radA Streptococcus pneumoniae R6

59.081

99.782

0.59
  radA Streptococcus pneumoniae TIGR4

59.081

99.782

0.59
  radA Bacillus subtilis subsp. subtilis str. 168

56.863

100

0.57

Multiple sequence alignment